Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01025

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdcp and ydeJ are separated by 44 nucleotidesydeJ and ydeI are separated by 275 nucleotidesydeI and dgcZ are separated by 254 nucleotides OKFHMN_01020: dcp - peptidyl-dipeptidase Dcp, at 95,331 to 97,376 dcp OKFHMN_01025: ydeJ - 2-oxo-tetronate isomerase, at 97,421 to 97,939 ydeJ OKFHMN_01030: ydeI - YdeI family stress tolerance OB fold protein, at 98,215 to 98,607 ydeI OKFHMN_01035: dgcZ - diguanylate cyclase DgcZ, at 98,862 to 99,752 dgcZ Position (kb) 97 98Strain fitness (log2 ratio) -1 0 1at 96.501 kb on + strand, within dcpat 96.539 kb on + strand, within dcpat 96.734 kb on - strand, within dcpat 97.284 kb on - strandat 97.340 kb on + strandat 97.372 kb on + strandat 97.372 kb on + strandat 97.372 kb on + strandat 97.374 kb on + strandat 97.473 kb on - strand, within ydeJat 97.529 kb on - strand, within ydeJat 97.988 kb on - strandat 98.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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96,501 + dcp OKFHMN_01020 0.57 +1.5
96,539 + dcp OKFHMN_01020 0.59 -0.0
96,734 - dcp OKFHMN_01020 0.69 -0.1
97,284 - +0.8
97,340 + +0.5
97,372 + +0.7
97,372 + +0.9
97,372 + +1.5
97,374 + +0.8
97,473 - ydeJ OKFHMN_01025 0.10 +0.1
97,529 - ydeJ OKFHMN_01025 0.21 -1.1
97,988 - +0.5
98,105 - -0.1

Or see this region's nucleotide sequence