Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00450

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdAP2 and traX are separated by 58 nucleotidestraX and OKFHMN_00450 are separated by 19 nucleotides OKFHMN_00440: dAP2 - Uncharacterized protein in traX-finO intergenic region, at 88,881 to 89,741 dAP2 OKFHMN_00445: traX - conjugal transfer pilus acetylase TraX, at 89,800 to 90,546 traX OKFHMN_00450: OKFHMN_00450 - TraI domain-containing protein, at 90,566 to 91,822 _00450 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 89.652 kb on + strand, within dAP2at 89.652 kb on + strand, within dAP2at 89.654 kb on - strand, within dAP2at 89.658 kb on - strandat 89.674 kb on - strandat 89.674 kb on - strandat 89.675 kb on + strandat 89.676 kb on - strandat 89.746 kb on - strandat 89.755 kb on + strandat 89.756 kb on - strandat 89.756 kb on - strandat 89.764 kb on + strandat 89.764 kb on + strandat 89.770 kb on + strandat 89.770 kb on + strandat 89.840 kb on + strandat 89.840 kb on + strandat 89.840 kb on + strandat 89.841 kb on - strandat 89.938 kb on + strand, within traXat 89.939 kb on - strand, within traXat 89.967 kb on + strand, within traXat 89.968 kb on - strand, within traXat 89.968 kb on - strand, within traXat 89.968 kb on - strand, within traXat 89.968 kb on - strand, within traXat 90.036 kb on - strand, within traXat 90.135 kb on + strand, within traXat 90.136 kb on - strand, within traXat 90.136 kb on - strand, within traXat 90.202 kb on - strand, within traXat 90.213 kb on - strand, within traXat 90.213 kb on - strand, within traXat 90.233 kb on + strand, within traXat 90.234 kb on - strand, within traXat 90.234 kb on - strand, within traXat 90.236 kb on + strand, within traXat 90.237 kb on - strand, within traXat 90.237 kb on - strand, within traXat 90.295 kb on - strand, within traXat 90.295 kb on - strand, within traXat 90.413 kb on - strand, within traXat 90.516 kb on + strandat 90.516 kb on + strandat 90.517 kb on - strandat 90.565 kb on - strandat 90.565 kb on - strandat 90.610 kb on + strandat 90.701 kb on + strand, within OKFHMN_00450at 90.701 kb on + strand, within OKFHMN_00450at 90.701 kb on + strand, within OKFHMN_00450at 90.702 kb on - strand, within OKFHMN_00450at 90.897 kb on - strand, within OKFHMN_00450at 90.897 kb on - strand, within OKFHMN_00450at 90.897 kb on - strand, within OKFHMN_00450at 91.045 kb on + strand, within OKFHMN_00450at 91.075 kb on + strand, within OKFHMN_00450at 91.075 kb on + strand, within OKFHMN_00450at 91.079 kb on - strand, within OKFHMN_00450at 91.260 kb on + strand, within OKFHMN_00450at 91.260 kb on + strand, within OKFHMN_00450at 91.260 kb on + strand, within OKFHMN_00450at 91.272 kb on + strand, within OKFHMN_00450at 91.273 kb on - strand, within OKFHMN_00450at 91.277 kb on - strand, within OKFHMN_00450at 91.455 kb on - strand, within OKFHMN_00450at 91.500 kb on + strand, within OKFHMN_00450at 91.500 kb on + strand, within OKFHMN_00450at 91.500 kb on + strand, within OKFHMN_00450at 91.500 kb on + strand, within OKFHMN_00450at 91.539 kb on + strand, within OKFHMN_00450at 91.539 kb on + strand, within OKFHMN_00450at 91.539 kb on + strand, within OKFHMN_00450at 91.540 kb on - strand, within OKFHMN_00450at 91.540 kb on - strand, within OKFHMN_00450at 91.540 kb on - strand, within OKFHMN_00450at 91.582 kb on + strand, within OKFHMN_00450at 91.583 kb on - strand, within OKFHMN_00450at 91.645 kb on - strand, within OKFHMN_00450at 91.645 kb on - strand, within OKFHMN_00450at 91.657 kb on + strand, within OKFHMN_00450at 91.657 kb on + strand, within OKFHMN_00450at 91.657 kb on + strand, within OKFHMN_00450at 91.658 kb on - strand, within OKFHMN_00450at 91.771 kb on - strandat 91.771 kb on - strandat 91.771 kb on - strandat 91.895 kb on - strandat 92.312 kb on + strandat 92.313 kb on - strandat 92.313 kb on - strandat 92.396 kb on + strandat 92.445 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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89,652 + dAP2 OKFHMN_00440 0.90 -0.0
89,652 + dAP2 OKFHMN_00440 0.90 +1.5
89,654 - dAP2 OKFHMN_00440 0.90 +0.6
89,658 - -0.9
89,674 - -1.8
89,674 - +0.5
89,675 + +0.1
89,676 - -0.4
89,746 - -0.3
89,755 + +0.3
89,756 - -0.5
89,756 - +0.8
89,764 + -0.7
89,764 + -1.3
89,770 + -0.5
89,770 + -0.3
89,840 + +0.5
89,840 + +0.3
89,840 + +1.3
89,841 - -0.1
89,938 + traX OKFHMN_00445 0.18 +0.1
89,939 - traX OKFHMN_00445 0.19 +0.6
89,967 + traX OKFHMN_00445 0.22 -0.2
89,968 - traX OKFHMN_00445 0.22 -0.1
89,968 - traX OKFHMN_00445 0.22 +0.5
89,968 - traX OKFHMN_00445 0.22 -0.7
89,968 - traX OKFHMN_00445 0.22 +1.5
90,036 - traX OKFHMN_00445 0.32 +0.3
90,135 + traX OKFHMN_00445 0.45 -0.7
90,136 - traX OKFHMN_00445 0.45 +1.3
90,136 - traX OKFHMN_00445 0.45 +0.2
90,202 - traX OKFHMN_00445 0.54 -0.1
90,213 - traX OKFHMN_00445 0.55 +0.7
90,213 - traX OKFHMN_00445 0.55 -0.5
90,233 + traX OKFHMN_00445 0.58 -1.2
90,234 - traX OKFHMN_00445 0.58 -2.5
90,234 - traX OKFHMN_00445 0.58 -0.7
90,236 + traX OKFHMN_00445 0.58 -2.0
90,237 - traX OKFHMN_00445 0.59 -0.2
90,237 - traX OKFHMN_00445 0.59 -1.4
90,295 - traX OKFHMN_00445 0.66 +0.1
90,295 - traX OKFHMN_00445 0.66 +0.5
90,413 - traX OKFHMN_00445 0.82 -0.2
90,516 + -0.4
90,516 + -0.4
90,517 - -0.7
90,565 - -0.4
90,565 - -0.7
90,610 + +0.5
90,701 + OKFHMN_00450 0.11 +1.1
90,701 + OKFHMN_00450 0.11 +0.1
90,701 + OKFHMN_00450 0.11 +0.7
90,702 - OKFHMN_00450 0.11 +0.9
90,897 - OKFHMN_00450 0.26 -1.2
90,897 - OKFHMN_00450 0.26 -0.3
90,897 - OKFHMN_00450 0.26 +2.6
91,045 + OKFHMN_00450 0.38 -0.9
91,075 + OKFHMN_00450 0.40 -0.3
91,075 + OKFHMN_00450 0.40 +0.2
91,079 - OKFHMN_00450 0.41 -0.6
91,260 + OKFHMN_00450 0.55 +0.1
91,260 + OKFHMN_00450 0.55 +0.1
91,260 + OKFHMN_00450 0.55 +0.3
91,272 + OKFHMN_00450 0.56 +1.0
91,273 - OKFHMN_00450 0.56 +1.0
91,277 - OKFHMN_00450 0.57 -0.9
91,455 - OKFHMN_00450 0.71 +0.7
91,500 + OKFHMN_00450 0.74 +0.2
91,500 + OKFHMN_00450 0.74 +0.2
91,500 + OKFHMN_00450 0.74 -0.8
91,500 + OKFHMN_00450 0.74 -0.3
91,539 + OKFHMN_00450 0.77 -0.3
91,539 + OKFHMN_00450 0.77 -1.1
91,539 + OKFHMN_00450 0.77 +1.1
91,540 - OKFHMN_00450 0.77 +0.3
91,540 - OKFHMN_00450 0.77 +0.3
91,540 - OKFHMN_00450 0.77 +0.4
91,582 + OKFHMN_00450 0.81 -0.1
91,583 - OKFHMN_00450 0.81 -0.6
91,645 - OKFHMN_00450 0.86 +0.2
91,645 - OKFHMN_00450 0.86 +1.1
91,657 + OKFHMN_00450 0.87 -0.2
91,657 + OKFHMN_00450 0.87 +2.5
91,657 + OKFHMN_00450 0.87 +0.5
91,658 - OKFHMN_00450 0.87 -1.3
91,771 - -0.3
91,771 - -0.2
91,771 - +0.3
91,895 - -2.3
92,312 + -0.1
92,313 - -0.8
92,313 - +0.2
92,396 + +0.2
92,445 + -0.5

Or see this region's nucleotide sequence