Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00385

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttra5 and OKFHMN_00375 are separated by 358 nucleotidesOKFHMN_00375 and parE are separated by 94 nucleotidesparE and putA1 overlap by 1 nucleotidesputA1 and repA are separated by 918 nucleotides OKFHMN_00370: tra5 - IS3 family transposase, at 82,271 to 82,750 tra5 OKFHMN_00375: OKFHMN_00375 - hypothetical protein, at 83,109 to 83,315 _00375 OKFHMN_00380: parE - plasmid stabilization protein, at 83,410 to 83,685 parE OKFHMN_00385: putA1 - CopG family transcriptional regulator, at 83,685 to 83,963 putA1 OKFHMN_00390: repA - incFII family plasmid replication initiator RepA, at 84,882 to 85,739 repA Position (kb) 83 84Strain fitness (log2 ratio) -2 -1 0 1 2at 82.785 kb on + strandat 82.785 kb on + strandat 82.838 kb on + strandat 82.839 kb on - strandat 82.936 kb on - strandat 82.989 kb on + strandat 82.990 kb on - strandat 83.009 kb on - strandat 83.019 kb on - strandat 83.019 kb on - strandat 83.126 kb on - strandat 83.135 kb on - strand, within OKFHMN_00375at 83.152 kb on - strand, within OKFHMN_00375at 83.157 kb on + strand, within OKFHMN_00375at 83.157 kb on + strand, within OKFHMN_00375at 83.157 kb on + strand, within OKFHMN_00375at 83.158 kb on - strand, within OKFHMN_00375at 83.158 kb on - strand, within OKFHMN_00375at 83.159 kb on + strand, within OKFHMN_00375at 83.160 kb on - strand, within OKFHMN_00375at 83.160 kb on - strand, within OKFHMN_00375at 83.236 kb on - strand, within OKFHMN_00375at 83.238 kb on - strand, within OKFHMN_00375at 83.267 kb on - strand, within OKFHMN_00375at 83.274 kb on - strand, within OKFHMN_00375at 83.277 kb on - strand, within OKFHMN_00375at 83.341 kb on + strandat 83.353 kb on + strandat 83.354 kb on - strandat 83.357 kb on - strandat 83.357 kb on - strandat 83.384 kb on + strandat 83.385 kb on - strandat 83.385 kb on - strandat 83.390 kb on - strandat 83.390 kb on - strandat 83.390 kb on - strandat 83.412 kb on - strandat 83.443 kb on + strand, within parEat 83.444 kb on - strand, within parEat 83.447 kb on + strand, within parEat 83.447 kb on + strand, within parEat 83.448 kb on - strand, within parEat 83.452 kb on - strand, within parEat 83.464 kb on - strand, within parEat 83.531 kb on - strand, within parEat 83.637 kb on - strand, within parEat 83.638 kb on + strand, within parEat 83.639 kb on - strand, within parEat 83.664 kb on + strandat 83.665 kb on - strandat 83.740 kb on - strand, within putA1at 83.906 kb on + strand, within putA1at 84.031 kb on + strandat 84.050 kb on + strandat 84.051 kb on - strandat 84.051 kb on - strandat 84.051 kb on - strandat 84.051 kb on - strandat 84.051 kb on - strandat 84.060 kb on + strandat 84.060 kb on + strandat 84.061 kb on - strandat 84.069 kb on + strandat 84.070 kb on - strandat 84.070 kb on - strandat 84.075 kb on + strandat 84.075 kb on + strandat 84.075 kb on + strandat 84.076 kb on - strandat 84.076 kb on - strandat 84.076 kb on - strandat 84.190 kb on + strandat 84.190 kb on + strandat 84.191 kb on - strandat 84.191 kb on - strandat 84.241 kb on + strandat 84.242 kb on - strandat 84.399 kb on - strandat 84.520 kb on + strandat 84.520 kb on + strandat 84.521 kb on - strandat 84.521 kb on - strandat 84.521 kb on - strandat 84.521 kb on - strandat 84.521 kb on - strandat 84.521 kb on - strandat 84.573 kb on + strandat 84.578 kb on - strandat 84.578 kb on - strandat 84.582 kb on - strandat 84.587 kb on - strandat 84.597 kb on + strandat 84.597 kb on + strandat 84.597 kb on + strandat 84.598 kb on - strandat 84.609 kb on + strandat 84.616 kb on + strandat 84.774 kb on - strandat 84.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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82,785 + +0.0
82,785 + +0.1
82,838 + +1.4
82,839 - +0.8
82,936 - -0.2
82,989 + -1.9
82,990 - +0.1
83,009 - -0.1
83,019 - +0.6
83,019 - -0.3
83,126 - -0.4
83,135 - OKFHMN_00375 0.13 +1.3
83,152 - OKFHMN_00375 0.21 +0.6
83,157 + OKFHMN_00375 0.23 -0.5
83,157 + OKFHMN_00375 0.23 +1.4
83,157 + OKFHMN_00375 0.23 +0.1
83,158 - OKFHMN_00375 0.24 -0.9
83,158 - OKFHMN_00375 0.24 -0.3
83,159 + OKFHMN_00375 0.24 -0.2
83,160 - OKFHMN_00375 0.25 +1.5
83,160 - OKFHMN_00375 0.25 -0.5
83,236 - OKFHMN_00375 0.61 +0.6
83,238 - OKFHMN_00375 0.62 +1.1
83,267 - OKFHMN_00375 0.76 -0.1
83,274 - OKFHMN_00375 0.80 -0.8
83,277 - OKFHMN_00375 0.81 +0.6
83,341 + +0.3
83,353 + -1.0
83,354 - +0.3
83,357 - +0.5
83,357 - -0.8
83,384 + +1.1
83,385 - +0.5
83,385 - +0.5
83,390 - -0.1
83,390 - +2.1
83,390 - +0.8
83,412 - -0.1
83,443 + parE OKFHMN_00380 0.12 +0.5
83,444 - parE OKFHMN_00380 0.12 +0.3
83,447 + parE OKFHMN_00380 0.13 -0.7
83,447 + parE OKFHMN_00380 0.13 -0.2
83,448 - parE OKFHMN_00380 0.14 -0.1
83,452 - parE OKFHMN_00380 0.15 -0.7
83,464 - parE OKFHMN_00380 0.20 +0.1
83,531 - parE OKFHMN_00380 0.44 -1.1
83,637 - parE OKFHMN_00380 0.82 -1.7
83,638 + parE OKFHMN_00380 0.83 +0.9
83,639 - parE OKFHMN_00380 0.83 -1.3
83,664 + +0.3
83,665 - +0.8
83,740 - putA1 OKFHMN_00385 0.20 -0.6
83,906 + putA1 OKFHMN_00385 0.79 +0.5
84,031 + -0.2
84,050 + +0.9
84,051 - +0.5
84,051 - +0.5
84,051 - +0.5
84,051 - +1.0
84,051 - +0.8
84,060 + +0.8
84,060 + +0.4
84,061 - +0.3
84,069 + +0.2
84,070 - +0.9
84,070 - +0.6
84,075 + -1.2
84,075 + +0.6
84,075 + +0.5
84,076 - -0.9
84,076 - +1.1
84,076 - +0.1
84,190 + +1.3
84,190 + +0.0
84,191 - -0.5
84,191 - -0.3
84,241 + -0.6
84,242 - -0.8
84,399 - -0.8
84,520 + -2.0
84,520 + +1.4
84,521 - +0.2
84,521 - -0.4
84,521 - -0.9
84,521 - -0.3
84,521 - +0.5
84,521 - -1.5
84,573 + +0.3
84,578 - +0.2
84,578 - +1.5
84,582 - +0.8
84,587 - +2.1
84,597 + +1.8
84,597 + -0.0
84,597 + +2.5
84,598 - +0.4
84,609 + -0.0
84,616 + +1.1
84,774 - +0.2
84,911 - -0.9

Or see this region's nucleotide sequence