Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03876

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03875 and OHPLBJKB_03876 are separated by 13 nucleotidesOHPLBJKB_03876 and OHPLBJKB_03877 are separated by 264 nucleotidesOHPLBJKB_03877 and OHPLBJKB_03878 are separated by 35 nucleotidesOHPLBJKB_03878 and OHPLBJKB_03879 are separated by 36 nucleotidesOHPLBJKB_03879 and OHPLBJKB_03880 are separated by 210 nucleotides OHPLBJKB_03875: OHPLBJKB_03875 - Bifunctional NAD(P)H-hydrate repair enzyme Nnr, at 4,065,651 to 4,067,183 _03875 OHPLBJKB_03876: OHPLBJKB_03876 - Epoxyqueuosine reductase, at 4,067,197 to 4,068,336 _03876 OHPLBJKB_03877: OHPLBJKB_03877 - tRNA-Gly, at 4,068,601 to 4,068,676 _03877 OHPLBJKB_03878: OHPLBJKB_03878 - tRNA-Gly, at 4,068,712 to 4,068,787 _03878 OHPLBJKB_03879: OHPLBJKB_03879 - tRNA-Gly, at 4,068,824 to 4,068,899 _03879 OHPLBJKB_03880: OHPLBJKB_03880 - Oligoribonuclease, at 4,069,110 to 4,069,655 _03880 Position (kb) 4067 4068 4069Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4066.256 kb on + strand, within OHPLBJKB_03875at 4066.425 kb on + strand, within OHPLBJKB_03875at 4066.449 kb on - strand, within OHPLBJKB_03875at 4066.538 kb on + strand, within OHPLBJKB_03875at 4066.620 kb on - strand, within OHPLBJKB_03875at 4066.727 kb on + strand, within OHPLBJKB_03875at 4066.728 kb on - strand, within OHPLBJKB_03875at 4066.728 kb on - strand, within OHPLBJKB_03875at 4066.809 kb on + strand, within OHPLBJKB_03875at 4066.810 kb on - strand, within OHPLBJKB_03875at 4066.830 kb on - strand, within OHPLBJKB_03875at 4066.830 kb on - strand, within OHPLBJKB_03875at 4066.830 kb on - strand, within OHPLBJKB_03875at 4066.860 kb on + strand, within OHPLBJKB_03875at 4066.969 kb on + strand, within OHPLBJKB_03875at 4066.988 kb on + strand, within OHPLBJKB_03875at 4067.083 kb on + strandat 4067.083 kb on + strandat 4067.090 kb on + strandat 4067.162 kb on + strandat 4067.162 kb on + strandat 4067.162 kb on + strandat 4067.163 kb on - strandat 4067.166 kb on + strandat 4067.166 kb on + strandat 4067.167 kb on - strandat 4067.167 kb on - strandat 4067.186 kb on + strandat 4067.186 kb on + strandat 4067.186 kb on + strandat 4067.186 kb on + strandat 4067.186 kb on + strandat 4067.187 kb on - strandat 4067.187 kb on - strandat 4067.187 kb on - strandat 4067.187 kb on - strandat 4067.187 kb on - strandat 4067.187 kb on - strandat 4067.273 kb on + strandat 4067.274 kb on - strandat 4067.277 kb on + strandat 4067.277 kb on + strandat 4067.277 kb on + strandat 4067.277 kb on + strandat 4067.278 kb on - strandat 4067.278 kb on - strandat 4067.278 kb on - strandat 4067.278 kb on - strandat 4067.338 kb on + strand, within OHPLBJKB_03876at 4067.374 kb on - strand, within OHPLBJKB_03876at 4067.399 kb on + strand, within OHPLBJKB_03876at 4067.440 kb on + strand, within OHPLBJKB_03876at 4067.440 kb on + strand, within OHPLBJKB_03876at 4067.441 kb on - strand, within OHPLBJKB_03876at 4067.441 kb on - strand, within OHPLBJKB_03876at 4067.499 kb on + strand, within OHPLBJKB_03876at 4067.670 kb on + strand, within OHPLBJKB_03876at 4067.670 kb on + strand, within OHPLBJKB_03876at 4067.670 kb on + strand, within OHPLBJKB_03876at 4067.671 kb on - strand, within OHPLBJKB_03876at 4067.682 kb on + strand, within OHPLBJKB_03876at 4067.682 kb on + strand, within OHPLBJKB_03876at 4067.683 kb on - strand, within OHPLBJKB_03876at 4067.830 kb on + strand, within OHPLBJKB_03876at 4067.830 kb on + strand, within OHPLBJKB_03876at 4067.830 kb on + strand, within OHPLBJKB_03876at 4067.832 kb on + strand, within OHPLBJKB_03876at 4067.832 kb on + strand, within OHPLBJKB_03876at 4067.832 kb on + strand, within OHPLBJKB_03876at 4067.833 kb on - strand, within OHPLBJKB_03876at 4067.833 kb on - strand, within OHPLBJKB_03876at 4067.833 kb on - strand, within OHPLBJKB_03876at 4067.853 kb on + strand, within OHPLBJKB_03876at 4067.853 kb on + strand, within OHPLBJKB_03876at 4067.854 kb on - strand, within OHPLBJKB_03876at 4067.861 kb on - strand, within OHPLBJKB_03876at 4067.861 kb on - strand, within OHPLBJKB_03876at 4067.922 kb on + strand, within OHPLBJKB_03876at 4067.926 kb on + strand, within OHPLBJKB_03876at 4067.949 kb on + strand, within OHPLBJKB_03876at 4068.097 kb on - strand, within OHPLBJKB_03876at 4068.120 kb on + strand, within OHPLBJKB_03876at 4068.218 kb on + strand, within OHPLBJKB_03876at 4068.218 kb on + strand, within OHPLBJKB_03876at 4068.219 kb on - strand, within OHPLBJKB_03876at 4068.219 kb on - strand, within OHPLBJKB_03876at 4068.219 kb on - strand, within OHPLBJKB_03876at 4068.219 kb on - strand, within OHPLBJKB_03876at 4068.219 kb on - strand, within OHPLBJKB_03876at 4068.242 kb on + strandat 4068.243 kb on - strandat 4068.263 kb on + strandat 4068.449 kb on + strandat 4068.528 kb on + strandat 4068.585 kb on + strandat 4068.668 kb on + strand, within OHPLBJKB_03877at 4068.902 kb on - strandat 4068.905 kb on - strandat 4068.905 kb on - strandat 4068.905 kb on - strandat 4068.905 kb on - strandat 4069.092 kb on - strandat 4069.092 kb on - strandat 4069.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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4,066,256 + OHPLBJKB_03875 0.39 -0.7
4,066,425 + OHPLBJKB_03875 0.50 -0.6
4,066,449 - OHPLBJKB_03875 0.52 +0.0
4,066,538 + OHPLBJKB_03875 0.58 +0.6
4,066,620 - OHPLBJKB_03875 0.63 +0.2
4,066,727 + OHPLBJKB_03875 0.70 +0.1
4,066,728 - OHPLBJKB_03875 0.70 +0.7
4,066,728 - OHPLBJKB_03875 0.70 -0.9
4,066,809 + OHPLBJKB_03875 0.76 -0.9
4,066,810 - OHPLBJKB_03875 0.76 +1.6
4,066,830 - OHPLBJKB_03875 0.77 +0.9
4,066,830 - OHPLBJKB_03875 0.77 +0.7
4,066,830 - OHPLBJKB_03875 0.77 +1.5
4,066,860 + OHPLBJKB_03875 0.79 +0.4
4,066,969 + OHPLBJKB_03875 0.86 -0.5
4,066,988 + OHPLBJKB_03875 0.87 -1.4
4,067,083 + -0.2
4,067,083 + -0.2
4,067,090 + -0.7
4,067,162 + +1.3
4,067,162 + -1.1
4,067,162 + +0.0
4,067,163 - +1.4
4,067,166 + -0.7
4,067,166 + -0.5
4,067,167 - -0.7
4,067,167 - -0.4
4,067,186 + -0.3
4,067,186 + +0.5
4,067,186 + +0.2
4,067,186 + +0.4
4,067,186 + -0.2
4,067,187 - -0.1
4,067,187 - -1.1
4,067,187 - -0.5
4,067,187 - -1.1
4,067,187 - +1.7
4,067,187 - -0.1
4,067,273 + -0.2
4,067,274 - -0.2
4,067,277 + -1.6
4,067,277 + -0.8
4,067,277 + +0.3
4,067,277 + -0.2
4,067,278 - +0.8
4,067,278 - -0.1
4,067,278 - -0.2
4,067,278 - +0.2
4,067,338 + OHPLBJKB_03876 0.12 -1.5
4,067,374 - OHPLBJKB_03876 0.16 +0.0
4,067,399 + OHPLBJKB_03876 0.18 +0.8
4,067,440 + OHPLBJKB_03876 0.21 +0.7
4,067,440 + OHPLBJKB_03876 0.21 +0.5
4,067,441 - OHPLBJKB_03876 0.21 +0.6
4,067,441 - OHPLBJKB_03876 0.21 +0.5
4,067,499 + OHPLBJKB_03876 0.26 -0.7
4,067,670 + OHPLBJKB_03876 0.41 +1.3
4,067,670 + OHPLBJKB_03876 0.41 -0.9
4,067,670 + OHPLBJKB_03876 0.41 +0.9
4,067,671 - OHPLBJKB_03876 0.42 -0.4
4,067,682 + OHPLBJKB_03876 0.43 +3.4
4,067,682 + OHPLBJKB_03876 0.43 -0.9
4,067,683 - OHPLBJKB_03876 0.43 +0.0
4,067,830 + OHPLBJKB_03876 0.56 +1.3
4,067,830 + OHPLBJKB_03876 0.56 +1.3
4,067,830 + OHPLBJKB_03876 0.56 -0.6
4,067,832 + OHPLBJKB_03876 0.56 -0.7
4,067,832 + OHPLBJKB_03876 0.56 +0.5
4,067,832 + OHPLBJKB_03876 0.56 +1.2
4,067,833 - OHPLBJKB_03876 0.56 -0.4
4,067,833 - OHPLBJKB_03876 0.56 +1.2
4,067,833 - OHPLBJKB_03876 0.56 -1.3
4,067,853 + OHPLBJKB_03876 0.58 -0.1
4,067,853 + OHPLBJKB_03876 0.58 +0.1
4,067,854 - OHPLBJKB_03876 0.58 +1.3
4,067,861 - OHPLBJKB_03876 0.58 -0.3
4,067,861 - OHPLBJKB_03876 0.58 -0.2
4,067,922 + OHPLBJKB_03876 0.64 -0.3
4,067,926 + OHPLBJKB_03876 0.64 +0.7
4,067,949 + OHPLBJKB_03876 0.66 +0.7
4,068,097 - OHPLBJKB_03876 0.79 -0.1
4,068,120 + OHPLBJKB_03876 0.81 +0.4
4,068,218 + OHPLBJKB_03876 0.90 -0.4
4,068,218 + OHPLBJKB_03876 0.90 -1.6
4,068,219 - OHPLBJKB_03876 0.90 -2.5
4,068,219 - OHPLBJKB_03876 0.90 +0.4
4,068,219 - OHPLBJKB_03876 0.90 -0.7
4,068,219 - OHPLBJKB_03876 0.90 -0.1
4,068,219 - OHPLBJKB_03876 0.90 -0.0
4,068,242 + -0.1
4,068,243 - +1.5
4,068,263 + +0.6
4,068,449 + +0.2
4,068,528 + +1.3
4,068,585 + -0.1
4,068,668 + OHPLBJKB_03877 0.88 +0.3
4,068,902 - -1.8
4,068,905 - +0.2
4,068,905 - -1.1
4,068,905 - -0.5
4,068,905 - -0.4
4,069,092 - +0.0
4,069,092 - +0.4
4,069,122 - +0.1

Or see this region's nucleotide sequence