Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01906 and OHPLBJKB_01907 are separated by 824 nucleotides OHPLBJKB_01907 and OHPLBJKB_01908 are separated by 165 nucleotides OHPLBJKB_01908 and OHPLBJKB_01909 overlap by 4 nucleotides
OHPLBJKB_01906: OHPLBJKB_01906 - hypothetical protein, at 1,983,100 to 1,983,387
_01906
OHPLBJKB_01907: OHPLBJKB_01907 - Cold shock-like protein CspC, at 1,984,212 to 1,984,421
_01907
OHPLBJKB_01908: OHPLBJKB_01908 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 1,984,587 to 1,985,396
_01908
OHPLBJKB_01909: OHPLBJKB_01909 - putative manganese efflux pump MntP, at 1,985,393 to 1,985,959
_01909
Position (kb)
1984
1985 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1983.278 kb on + strand, within OHPLBJKB_01906 at 1983.318 kb on + strand, within OHPLBJKB_01906 at 1983.444 kb on + strand at 1983.446 kb on + strand at 1983.566 kb on - strand at 1983.604 kb on - strand at 1983.718 kb on - strand at 1983.794 kb on - strand at 1983.794 kb on - strand at 1983.798 kb on - strand at 1983.800 kb on + strand at 1983.834 kb on - strand at 1983.841 kb on + strand at 1983.841 kb on + strand at 1983.842 kb on - strand at 1983.901 kb on + strand at 1983.925 kb on + strand at 1983.926 kb on - strand at 1983.926 kb on - strand at 1984.012 kb on + strand at 1984.012 kb on + strand at 1984.055 kb on + strand at 1984.055 kb on + strand at 1984.055 kb on + strand at 1984.128 kb on + strand at 1984.131 kb on - strand at 1984.131 kb on - strand at 1984.149 kb on - strand at 1984.162 kb on + strand at 1984.166 kb on + strand at 1984.166 kb on + strand at 1984.166 kb on + strand at 1984.166 kb on + strand at 1984.167 kb on - strand at 1984.167 kb on - strand at 1984.171 kb on + strand at 1984.172 kb on - strand at 1984.235 kb on + strand, within OHPLBJKB_01907 at 1984.408 kb on + strand at 1984.415 kb on + strand at 1984.415 kb on + strand at 1984.415 kb on + strand at 1984.416 kb on - strand at 1984.448 kb on + strand at 1984.449 kb on - strand at 1984.467 kb on - strand at 1984.467 kb on - strand at 1984.504 kb on - strand at 1984.526 kb on + strand at 1984.566 kb on + strand at 1984.567 kb on - strand at 1984.567 kb on - strand at 1984.641 kb on + strand at 1984.641 kb on + strand at 1984.641 kb on + strand at 1984.641 kb on + strand at 1984.641 kb on + strand at 1984.641 kb on + strand at 1984.641 kb on + strand at 1984.641 kb on + strand at 1984.642 kb on - strand at 1984.642 kb on - strand at 1984.642 kb on - strand at 1984.642 kb on - strand at 1984.642 kb on - strand at 1984.642 kb on - strand at 1984.642 kb on - strand at 1984.643 kb on + strand at 1984.643 kb on + strand at 1984.644 kb on - strand at 1984.687 kb on - strand, within OHPLBJKB_01908 at 1984.687 kb on - strand, within OHPLBJKB_01908 at 1984.713 kb on - strand, within OHPLBJKB_01908 at 1984.771 kb on + strand, within OHPLBJKB_01908 at 1984.879 kb on - strand, within OHPLBJKB_01908 at 1984.881 kb on + strand, within OHPLBJKB_01908 at 1984.881 kb on + strand, within OHPLBJKB_01908 at 1984.882 kb on - strand, within OHPLBJKB_01908 at 1985.030 kb on + strand, within OHPLBJKB_01908 at 1985.030 kb on + strand, within OHPLBJKB_01908 at 1985.041 kb on + strand, within OHPLBJKB_01908 at 1985.042 kb on - strand, within OHPLBJKB_01908 at 1985.042 kb on - strand, within OHPLBJKB_01908 at 1985.044 kb on + strand, within OHPLBJKB_01908 at 1985.044 kb on + strand, within OHPLBJKB_01908 at 1985.045 kb on - strand, within OHPLBJKB_01908 at 1985.048 kb on + strand, within OHPLBJKB_01908 at 1985.048 kb on + strand, within OHPLBJKB_01908 at 1985.049 kb on - strand, within OHPLBJKB_01908 at 1985.049 kb on - strand, within OHPLBJKB_01908 at 1985.049 kb on - strand, within OHPLBJKB_01908 at 1985.049 kb on - strand, within OHPLBJKB_01908 at 1985.049 kb on - strand, within OHPLBJKB_01908 at 1985.087 kb on - strand, within OHPLBJKB_01908 at 1985.170 kb on + strand, within OHPLBJKB_01908 at 1985.171 kb on - strand, within OHPLBJKB_01908 at 1985.171 kb on - strand, within OHPLBJKB_01908 at 1985.210 kb on + strand, within OHPLBJKB_01908 at 1985.216 kb on - strand, within OHPLBJKB_01908 at 1985.275 kb on + strand, within OHPLBJKB_01908 at 1985.370 kb on - strand at 1985.391 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 1,983,278 + OHPLBJKB_01906 0.62 -0.6 1,983,318 + OHPLBJKB_01906 0.76 +0.1 1,983,444 + -2.0 1,983,446 + -0.1 1,983,566 - -0.8 1,983,604 - +0.9 1,983,718 - -0.9 1,983,794 - -0.1 1,983,794 - -1.3 1,983,798 - +0.1 1,983,800 + +1.6 1,983,834 - +0.6 1,983,841 + -0.6 1,983,841 + +0.3 1,983,842 - -1.5 1,983,901 + +1.1 1,983,925 + +0.6 1,983,926 - -0.1 1,983,926 - +0.4 1,984,012 + -0.3 1,984,012 + -0.4 1,984,055 + -0.4 1,984,055 + -0.6 1,984,055 + -0.2 1,984,128 + -0.8 1,984,131 - -2.3 1,984,131 - +0.2 1,984,149 - +0.1 1,984,162 + -1.0 1,984,166 + -0.8 1,984,166 + -0.1 1,984,166 + -0.5 1,984,166 + -0.0 1,984,167 - -0.9 1,984,167 - -0.2 1,984,171 + -0.2 1,984,172 - +1.1 1,984,235 + OHPLBJKB_01907 0.11 -0.4 1,984,408 + +0.7 1,984,415 + +0.2 1,984,415 + -0.1 1,984,415 + -0.1 1,984,416 - -1.6 1,984,448 + +0.6 1,984,449 - +0.5 1,984,467 - -0.1 1,984,467 - +0.5 1,984,504 - -1.3 1,984,526 + -0.4 1,984,566 + +0.1 1,984,567 - -1.1 1,984,567 - +0.1 1,984,641 + +0.2 1,984,641 + -0.8 1,984,641 + -1.1 1,984,641 + +1.3 1,984,641 + +2.8 1,984,641 + -0.5 1,984,641 + +0.5 1,984,641 + +0.6 1,984,642 - +0.6 1,984,642 - -0.0 1,984,642 - -0.5 1,984,642 - -0.4 1,984,642 - -0.7 1,984,642 - +0.0 1,984,642 - -1.5 1,984,643 + +1.2 1,984,643 + -2.7 1,984,644 - -1.0 1,984,687 - OHPLBJKB_01908 0.12 -0.1 1,984,687 - OHPLBJKB_01908 0.12 +0.9 1,984,713 - OHPLBJKB_01908 0.16 +1.0 1,984,771 + OHPLBJKB_01908 0.23 -0.1 1,984,879 - OHPLBJKB_01908 0.36 +0.8 1,984,881 + OHPLBJKB_01908 0.36 +0.6 1,984,881 + OHPLBJKB_01908 0.36 -0.4 1,984,882 - OHPLBJKB_01908 0.36 +0.1 1,985,030 + OHPLBJKB_01908 0.55 +0.6 1,985,030 + OHPLBJKB_01908 0.55 +0.2 1,985,041 + OHPLBJKB_01908 0.56 -0.4 1,985,042 - OHPLBJKB_01908 0.56 +0.5 1,985,042 - OHPLBJKB_01908 0.56 -0.7 1,985,044 + OHPLBJKB_01908 0.56 -1.2 1,985,044 + OHPLBJKB_01908 0.56 +0.0 1,985,045 - OHPLBJKB_01908 0.57 -0.5 1,985,048 + OHPLBJKB_01908 0.57 +0.3 1,985,048 + OHPLBJKB_01908 0.57 -0.1 1,985,049 - OHPLBJKB_01908 0.57 +0.4 1,985,049 - OHPLBJKB_01908 0.57 -0.2 1,985,049 - OHPLBJKB_01908 0.57 +0.2 1,985,049 - OHPLBJKB_01908 0.57 +0.2 1,985,049 - OHPLBJKB_01908 0.57 +2.4 1,985,087 - OHPLBJKB_01908 0.62 +0.3 1,985,170 + OHPLBJKB_01908 0.72 +0.2 1,985,171 - OHPLBJKB_01908 0.72 -2.1 1,985,171 - OHPLBJKB_01908 0.72 +0.1 1,985,210 + OHPLBJKB_01908 0.77 +1.0 1,985,216 - OHPLBJKB_01908 0.78 +0.8 1,985,275 + OHPLBJKB_01908 0.85 +0.6 1,985,370 - -1.0 1,985,391 + +1.0
Or see this region's nucleotide sequence