Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01907

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01906 and OHPLBJKB_01907 are separated by 824 nucleotidesOHPLBJKB_01907 and OHPLBJKB_01908 are separated by 165 nucleotidesOHPLBJKB_01908 and OHPLBJKB_01909 overlap by 4 nucleotides OHPLBJKB_01906: OHPLBJKB_01906 - hypothetical protein, at 1,983,100 to 1,983,387 _01906 OHPLBJKB_01907: OHPLBJKB_01907 - Cold shock-like protein CspC, at 1,984,212 to 1,984,421 _01907 OHPLBJKB_01908: OHPLBJKB_01908 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 1,984,587 to 1,985,396 _01908 OHPLBJKB_01909: OHPLBJKB_01909 - putative manganese efflux pump MntP, at 1,985,393 to 1,985,959 _01909 Position (kb) 1984 1985Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1983.278 kb on + strand, within OHPLBJKB_01906at 1983.318 kb on + strand, within OHPLBJKB_01906at 1983.444 kb on + strandat 1983.446 kb on + strandat 1983.566 kb on - strandat 1983.604 kb on - strandat 1983.718 kb on - strandat 1983.794 kb on - strandat 1983.794 kb on - strandat 1983.798 kb on - strandat 1983.800 kb on + strandat 1983.834 kb on - strandat 1983.841 kb on + strandat 1983.841 kb on + strandat 1983.842 kb on - strandat 1983.901 kb on + strandat 1983.925 kb on + strandat 1983.926 kb on - strandat 1983.926 kb on - strandat 1984.012 kb on + strandat 1984.012 kb on + strandat 1984.055 kb on + strandat 1984.055 kb on + strandat 1984.055 kb on + strandat 1984.128 kb on + strandat 1984.131 kb on - strandat 1984.131 kb on - strandat 1984.149 kb on - strandat 1984.162 kb on + strandat 1984.166 kb on + strandat 1984.166 kb on + strandat 1984.166 kb on + strandat 1984.166 kb on + strandat 1984.167 kb on - strandat 1984.167 kb on - strandat 1984.171 kb on + strandat 1984.172 kb on - strandat 1984.235 kb on + strand, within OHPLBJKB_01907at 1984.408 kb on + strandat 1984.415 kb on + strandat 1984.415 kb on + strandat 1984.415 kb on + strandat 1984.416 kb on - strandat 1984.448 kb on + strandat 1984.449 kb on - strandat 1984.467 kb on - strandat 1984.467 kb on - strandat 1984.504 kb on - strandat 1984.526 kb on + strandat 1984.566 kb on + strandat 1984.567 kb on - strandat 1984.567 kb on - strandat 1984.641 kb on + strandat 1984.641 kb on + strandat 1984.641 kb on + strandat 1984.641 kb on + strandat 1984.641 kb on + strandat 1984.641 kb on + strandat 1984.641 kb on + strandat 1984.641 kb on + strandat 1984.642 kb on - strandat 1984.642 kb on - strandat 1984.642 kb on - strandat 1984.642 kb on - strandat 1984.642 kb on - strandat 1984.642 kb on - strandat 1984.642 kb on - strandat 1984.643 kb on + strandat 1984.643 kb on + strandat 1984.644 kb on - strandat 1984.687 kb on - strand, within OHPLBJKB_01908at 1984.687 kb on - strand, within OHPLBJKB_01908at 1984.713 kb on - strand, within OHPLBJKB_01908at 1984.771 kb on + strand, within OHPLBJKB_01908at 1984.879 kb on - strand, within OHPLBJKB_01908at 1984.881 kb on + strand, within OHPLBJKB_01908at 1984.881 kb on + strand, within OHPLBJKB_01908at 1984.882 kb on - strand, within OHPLBJKB_01908at 1985.030 kb on + strand, within OHPLBJKB_01908at 1985.030 kb on + strand, within OHPLBJKB_01908at 1985.041 kb on + strand, within OHPLBJKB_01908at 1985.042 kb on - strand, within OHPLBJKB_01908at 1985.042 kb on - strand, within OHPLBJKB_01908at 1985.044 kb on + strand, within OHPLBJKB_01908at 1985.044 kb on + strand, within OHPLBJKB_01908at 1985.045 kb on - strand, within OHPLBJKB_01908at 1985.048 kb on + strand, within OHPLBJKB_01908at 1985.048 kb on + strand, within OHPLBJKB_01908at 1985.049 kb on - strand, within OHPLBJKB_01908at 1985.049 kb on - strand, within OHPLBJKB_01908at 1985.049 kb on - strand, within OHPLBJKB_01908at 1985.049 kb on - strand, within OHPLBJKB_01908at 1985.049 kb on - strand, within OHPLBJKB_01908at 1985.087 kb on - strand, within OHPLBJKB_01908at 1985.170 kb on + strand, within OHPLBJKB_01908at 1985.171 kb on - strand, within OHPLBJKB_01908at 1985.171 kb on - strand, within OHPLBJKB_01908at 1985.210 kb on + strand, within OHPLBJKB_01908at 1985.216 kb on - strand, within OHPLBJKB_01908at 1985.275 kb on + strand, within OHPLBJKB_01908at 1985.370 kb on - strandat 1985.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,983,278 + OHPLBJKB_01906 0.62 -0.6
1,983,318 + OHPLBJKB_01906 0.76 +0.1
1,983,444 + -2.0
1,983,446 + -0.1
1,983,566 - -0.8
1,983,604 - +0.9
1,983,718 - -0.9
1,983,794 - -0.1
1,983,794 - -1.3
1,983,798 - +0.1
1,983,800 + +1.6
1,983,834 - +0.6
1,983,841 + -0.6
1,983,841 + +0.3
1,983,842 - -1.5
1,983,901 + +1.1
1,983,925 + +0.6
1,983,926 - -0.1
1,983,926 - +0.4
1,984,012 + -0.3
1,984,012 + -0.4
1,984,055 + -0.4
1,984,055 + -0.6
1,984,055 + -0.2
1,984,128 + -0.8
1,984,131 - -2.3
1,984,131 - +0.2
1,984,149 - +0.1
1,984,162 + -1.0
1,984,166 + -0.8
1,984,166 + -0.1
1,984,166 + -0.5
1,984,166 + -0.0
1,984,167 - -0.9
1,984,167 - -0.2
1,984,171 + -0.2
1,984,172 - +1.1
1,984,235 + OHPLBJKB_01907 0.11 -0.4
1,984,408 + +0.7
1,984,415 + +0.2
1,984,415 + -0.1
1,984,415 + -0.1
1,984,416 - -1.6
1,984,448 + +0.6
1,984,449 - +0.5
1,984,467 - -0.1
1,984,467 - +0.5
1,984,504 - -1.3
1,984,526 + -0.4
1,984,566 + +0.1
1,984,567 - -1.1
1,984,567 - +0.1
1,984,641 + +0.2
1,984,641 + -0.8
1,984,641 + -1.1
1,984,641 + +1.3
1,984,641 + +2.8
1,984,641 + -0.5
1,984,641 + +0.5
1,984,641 + +0.6
1,984,642 - +0.6
1,984,642 - -0.0
1,984,642 - -0.5
1,984,642 - -0.4
1,984,642 - -0.7
1,984,642 - +0.0
1,984,642 - -1.5
1,984,643 + +1.2
1,984,643 + -2.7
1,984,644 - -1.0
1,984,687 - OHPLBJKB_01908 0.12 -0.1
1,984,687 - OHPLBJKB_01908 0.12 +0.9
1,984,713 - OHPLBJKB_01908 0.16 +1.0
1,984,771 + OHPLBJKB_01908 0.23 -0.1
1,984,879 - OHPLBJKB_01908 0.36 +0.8
1,984,881 + OHPLBJKB_01908 0.36 +0.6
1,984,881 + OHPLBJKB_01908 0.36 -0.4
1,984,882 - OHPLBJKB_01908 0.36 +0.1
1,985,030 + OHPLBJKB_01908 0.55 +0.6
1,985,030 + OHPLBJKB_01908 0.55 +0.2
1,985,041 + OHPLBJKB_01908 0.56 -0.4
1,985,042 - OHPLBJKB_01908 0.56 +0.5
1,985,042 - OHPLBJKB_01908 0.56 -0.7
1,985,044 + OHPLBJKB_01908 0.56 -1.2
1,985,044 + OHPLBJKB_01908 0.56 +0.0
1,985,045 - OHPLBJKB_01908 0.57 -0.5
1,985,048 + OHPLBJKB_01908 0.57 +0.3
1,985,048 + OHPLBJKB_01908 0.57 -0.1
1,985,049 - OHPLBJKB_01908 0.57 +0.4
1,985,049 - OHPLBJKB_01908 0.57 -0.2
1,985,049 - OHPLBJKB_01908 0.57 +0.2
1,985,049 - OHPLBJKB_01908 0.57 +0.2
1,985,049 - OHPLBJKB_01908 0.57 +2.4
1,985,087 - OHPLBJKB_01908 0.62 +0.3
1,985,170 + OHPLBJKB_01908 0.72 +0.2
1,985,171 - OHPLBJKB_01908 0.72 -2.1
1,985,171 - OHPLBJKB_01908 0.72 +0.1
1,985,210 + OHPLBJKB_01908 0.77 +1.0
1,985,216 - OHPLBJKB_01908 0.78 +0.8
1,985,275 + OHPLBJKB_01908 0.85 +0.6
1,985,370 - -1.0
1,985,391 + +1.0

Or see this region's nucleotide sequence