Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ychO and narX are separated by 0 nucleotides narX and narX overlap by 8 nucleotides narX and OKFHMN_28530 are separated by 25 nucleotides OKFHMN_28530 and narK are separated by 94 nucleotides
OKFHMN_28515: ychO - inverse autotransporter invasin YchO, at 5,467,711 to 5,469,141
ychO
OKFHMN_28520: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 5,469,142 to 5,469,792
narX
OKFHMN_28525: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 5,469,785 to 5,471,581
narX
OKFHMN_28530: OKFHMN_28530 - hypothetical protein, at 5,471,607 to 5,471,825
_28530
OKFHMN_28535: narK - nitrate transporter NarK, at 5,471,920 to 5,473,311
narK
Position (kb) 5469
5470
5471
5472 Strain fitness (log2 ratio) -1
0
1 at 5469.403 kb on + strand, within narX at 5470.058 kb on - strand, within narX at 5470.168 kb on - strand, within narX at 5470.568 kb on - strand, within narX at 5471.410 kb on - strand at 5471.530 kb on + strand at 5471.546 kb on - strand at 5471.576 kb on - strand at 5471.584 kb on - strand at 5471.729 kb on + strand, within OKFHMN_28530 at 5472.551 kb on - strand, within narK at 5472.551 kb on - strand, within narK
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 5,469,403 + narX OKFHMN_28520 0.40 +0.7 5,470,058 - narX OKFHMN_28525 0.15 -0.1 5,470,168 - narX OKFHMN_28525 0.21 -0.7 5,470,568 - narX OKFHMN_28525 0.44 -0.9 5,471,410 - -0.1 5,471,530 + -0.3 5,471,546 - +0.9 5,471,576 - -0.5 5,471,584 - +0.7 5,471,729 + OKFHMN_28530 0.56 +0.1 5,472,551 - narK OKFHMN_28535 0.45 +1.7 5,472,551 - narK OKFHMN_28535 0.45 -0.0
Or see this region's nucleotide sequence