Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28350

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycgR and ymgE are separated by 200 nucleotidesymgE and fepA are separated by 49 nucleotidesfepA and modD are separated by 25 nucleotides OKFHMN_28340: ycgR - Flagellar brake protein YcgR, at 5,435,389 to 5,435,985 ycgR OKFHMN_28345: ymgE - UPF0410 protein YmgE, at 5,436,186 to 5,436,440 ymgE OKFHMN_28350: fepA - TonB-dependent receptor, at 5,436,490 to 5,438,460 fepA OKFHMN_28355: modD - Putative pyrophosphorylase ModD, at 5,438,486 to 5,439,340 modD Position (kb) 5436 5437 5438 5439Strain fitness (log2 ratio) -1 0 1 2at 5436.501 kb on - strandat 5436.611 kb on - strandat 5436.795 kb on + strand, within fepAat 5437.102 kb on - strand, within fepAat 5437.267 kb on + strand, within fepAat 5437.267 kb on + strand, within fepAat 5438.162 kb on + strand, within fepAat 5438.163 kb on - strand, within fepAat 5438.203 kb on - strand, within fepAat 5438.557 kb on + strandat 5438.859 kb on - strand, within modDat 5439.238 kb on - strand, within modDat 5439.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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5,436,501 - +2.7
5,436,611 - +0.1
5,436,795 + fepA OKFHMN_28350 0.15 +0.1
5,437,102 - fepA OKFHMN_28350 0.31 +2.7
5,437,267 + fepA OKFHMN_28350 0.39 -0.2
5,437,267 + fepA OKFHMN_28350 0.39 -0.8
5,438,162 + fepA OKFHMN_28350 0.85 -0.2
5,438,163 - fepA OKFHMN_28350 0.85 +1.5
5,438,203 - fepA OKFHMN_28350 0.87 +1.7
5,438,557 + +0.0
5,438,859 - modD OKFHMN_28355 0.44 +0.1
5,439,238 - modD OKFHMN_28355 0.88 +1.1
5,439,439 + +0.7

Or see this region's nucleotide sequence