Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27475

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydhJ and ydhI are separated by 2 nucleotidesydhI and slyA are separated by 200 nucleotidesslyA and slyB are separated by 46 nucleotidesslyB and anmK are separated by 272 nucleotides OKFHMN_27465: ydhJ - Uncharacterized protein YdhJ, at 5,288,573 to 5,289,430 ydhJ OKFHMN_27470: ydhI - Uncharacterized protein YdhI, at 5,289,433 to 5,289,669 ydhI OKFHMN_27475: slyA - transcriptional regulator SlyA, at 5,289,870 to 5,290,304 slyA OKFHMN_27480: slyB - outer membrane lipoprotein SlyB, at 5,290,351 to 5,290,818 slyB OKFHMN_27485: anmK - anhydro-N-acetylmuramic acid kinase, at 5,291,091 to 5,292,200 anmK Position (kb) 5289 5290 5291Strain fitness (log2 ratio) -2 -1 0 1 2at 5289.824 kb on + strandat 5290.456 kb on - strand, within slyBat 5290.762 kb on - strand, within slyBat 5290.787 kb on - strandat 5290.874 kb on + strandat 5290.884 kb on - strandat 5290.900 kb on - strandat 5290.900 kb on - strandat 5290.900 kb on - strandat 5290.915 kb on + strandat 5290.929 kb on - strandat 5290.953 kb on + strandat 5290.990 kb on - strandat 5291.000 kb on + strandat 5291.000 kb on + strandat 5291.001 kb on - strandat 5291.047 kb on + strandat 5291.090 kb on + strandat 5291.233 kb on + strand, within anmKat 5291.234 kb on - strand, within anmK

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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5,289,824 + +0.8
5,290,456 - slyB OKFHMN_27480 0.22 +0.3
5,290,762 - slyB OKFHMN_27480 0.88 -1.3
5,290,787 - +1.0
5,290,874 + +1.8
5,290,884 - +0.2
5,290,900 - +0.1
5,290,900 - +0.8
5,290,900 - -0.9
5,290,915 + +0.7
5,290,929 - -1.1
5,290,953 + +1.7
5,290,990 - +1.0
5,291,000 + -0.6
5,291,000 + -0.3
5,291,001 - +0.7
5,291,047 + -2.1
5,291,090 + -1.1
5,291,233 + anmK OKFHMN_27485 0.13 -0.3
5,291,234 - anmK OKFHMN_27485 0.13 +0.1

Or see this region's nucleotide sequence