Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26165

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcheY and cheZ are separated by 10 nucleotidescheZ and flhB are separated by 201 nucleotidesflhB and flhA overlap by 8 nucleotides OKFHMN_26155: cheY - chemotaxis regulatory protein CheY, at 5,041,052 to 5,041,441 cheY OKFHMN_26160: cheZ - protein phosphatase CheZ, at 5,041,452 to 5,042,096 cheZ OKFHMN_26165: flhB - flagellar biosynthesis protein FlhB, at 5,042,298 to 5,043,446 flhB OKFHMN_26170: flhA - flagellar biosynthesis protein FlhA, at 5,043,439 to 5,045,517 flhA Position (kb) 5042 5043 5044Strain fitness (log2 ratio) -1 0 1at 5041.618 kb on - strand, within cheZat 5041.618 kb on - strand, within cheZat 5041.620 kb on + strand, within cheZat 5041.620 kb on + strand, within cheZat 5041.620 kb on + strand, within cheZat 5041.791 kb on - strand, within cheZat 5042.178 kb on + strandat 5042.179 kb on - strandat 5042.273 kb on + strandat 5042.429 kb on + strand, within flhBat 5043.014 kb on + strand, within flhBat 5043.386 kb on + strandat 5043.582 kb on + strandat 5044.044 kb on + strand, within flhAat 5044.164 kb on + strand, within flhAat 5044.165 kb on - strand, within flhA

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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5,041,618 - cheZ OKFHMN_26160 0.26 -1.6
5,041,618 - cheZ OKFHMN_26160 0.26 +1.7
5,041,620 + cheZ OKFHMN_26160 0.26 +0.5
5,041,620 + cheZ OKFHMN_26160 0.26 -0.3
5,041,620 + cheZ OKFHMN_26160 0.26 +0.5
5,041,791 - cheZ OKFHMN_26160 0.53 +1.2
5,042,178 + +0.0
5,042,179 - -0.4
5,042,273 + +0.1
5,042,429 + flhB OKFHMN_26165 0.11 -1.4
5,043,014 + flhB OKFHMN_26165 0.62 +0.7
5,043,386 + +1.7
5,043,582 + -0.7
5,044,044 + flhA OKFHMN_26170 0.29 -1.5
5,044,164 + flhA OKFHMN_26170 0.35 -0.6
5,044,165 - flhA OKFHMN_26170 0.35 -1.1

Or see this region's nucleotide sequence