Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25380

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and OKFHMN_25380 are separated by 319 nucleotidesOKFHMN_25380 and OKFHMN_25385 are separated by 4 nucleotidesOKFHMN_25385 and OKFHMN_25390 are separated by 50 nucleotides OKFHMN_25370: tnp-IS3 - IS3 family transposase, at 4,916,381 to 4,917,268 tnp-IS3 OKFHMN_25375: tnp-IS3 - IS3 family transposase, at 4,917,268 to 4,917,594 tnp-IS3 OKFHMN_25380: OKFHMN_25380 - lysis protein, at 4,917,914 to 4,918,120 _25380 OKFHMN_25385: OKFHMN_25385 - DUF1327 domain-containing protein, at 4,918,125 to 4,918,469 _25385 OKFHMN_25390: OKFHMN_25390 - SAR-endolysin, at 4,918,520 to 4,919,053 _25390 Position (kb) 4917 4918 4919Strain fitness (log2 ratio) -1 0 1at 4917.665 kb on + strandat 4917.683 kb on + strandat 4917.683 kb on + strandat 4917.688 kb on - strandat 4917.688 kb on - strandat 4917.688 kb on - strandat 4917.689 kb on + strandat 4917.736 kb on + strandat 4918.699 kb on + strand, within OKFHMN_25390

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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4,917,665 + +0.7
4,917,683 + +0.9
4,917,683 + +0.1
4,917,688 - -0.8
4,917,688 - -0.3
4,917,688 - +1.1
4,917,689 + -0.7
4,917,736 + +0.2
4,918,699 + OKFHMN_25390 0.34 +0.3

Or see this region's nucleotide sequence