Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24230

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdtA and OKFHMN_24210 are separated by 279 nucleotidesOKFHMN_24210 and OKFHMN_24220 are separated by 271 nucleotidesOKFHMN_24220 and ibsA are separated by 271 nucleotidesibsA and terY are separated by 220 nucleotidesterY and pphC are separated by 77 nucleotides OKFHMN_24200: mdtA - multidrug efflux RND transporter subunit MdtA, at 4,725,098 to 4,726,345 mdtA OKFHMN_24210: OKFHMN_24210 - Type I toxin-antitoxin system Ibs family toxin, at 4,726,625 to 4,726,681 _24210 OKFHMN_24220: OKFHMN_24220 - Type I toxin-antitoxin system Ibs family toxin, at 4,726,953 to 4,727,009 _24220 OKFHMN_24230: ibsA - Small toxic protein IbsA, at 4,727,281 to 4,727,340 ibsA OKFHMN_24235: terY - Uncharacterized protein YegL, at 4,727,561 to 4,728,220 terY OKFHMN_24240: pphC - Serine/threonine-protein phosphatase 3, at 4,728,298 to 4,728,978 pphC Position (kb) 4727 4728Strain fitness (log2 ratio) -2 -1 0 1 2at 4726.302 kb on - strandat 4726.302 kb on - strandat 4726.311 kb on - strandat 4726.330 kb on + strandat 4726.386 kb on - strandat 4726.388 kb on + strandat 4726.388 kb on + strandat 4726.394 kb on - strandat 4726.427 kb on - strandat 4726.612 kb on + strandat 4726.613 kb on - strandat 4726.664 kb on - strand, within OKFHMN_24210at 4726.677 kb on - strandat 4726.677 kb on - strandat 4726.677 kb on - strandat 4726.680 kb on - strandat 4726.680 kb on - strandat 4726.680 kb on - strandat 4726.829 kb on + strandat 4726.878 kb on - strandat 4726.985 kb on - strand, within OKFHMN_24220at 4726.991 kb on - strand, within OKFHMN_24220at 4727.005 kb on - strandat 4727.180 kb on - strandat 4727.206 kb on - strandat 4727.264 kb on + strandat 4727.310 kb on - strand, within ibsAat 4727.310 kb on - strand, within ibsAat 4727.339 kb on - strandat 4727.407 kb on - strandat 4727.880 kb on + strand, within terYat 4727.914 kb on + strand, within terYat 4728.058 kb on + strand, within terYat 4728.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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4,726,302 - -1.3
4,726,302 - +2.1
4,726,311 - +1.1
4,726,330 + +0.7
4,726,386 - -0.2
4,726,388 + +0.7
4,726,388 + +1.7
4,726,394 - -1.3
4,726,427 - -0.1
4,726,612 + +1.1
4,726,613 - -1.6
4,726,664 - OKFHMN_24210 0.68 +1.0
4,726,677 - -0.7
4,726,677 - +0.0
4,726,677 - -0.4
4,726,680 - -0.1
4,726,680 - -0.6
4,726,680 - +0.1
4,726,829 + -0.5
4,726,878 - +0.7
4,726,985 - OKFHMN_24220 0.56 -0.7
4,726,991 - OKFHMN_24220 0.67 +0.4
4,727,005 - -0.6
4,727,180 - -1.9
4,727,206 - -1.0
4,727,264 + -0.1
4,727,310 - ibsA OKFHMN_24230 0.48 +1.0
4,727,310 - ibsA OKFHMN_24230 0.48 -0.2
4,727,339 - +0.3
4,727,407 - +0.2
4,727,880 + terY OKFHMN_24235 0.48 +0.9
4,727,914 + terY OKFHMN_24235 0.53 -0.5
4,728,058 + terY OKFHMN_24235 0.75 +0.7
4,728,333 - +0.7

Or see this region's nucleotide sequence