Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysR and araJ are separated by 151 nucleotides araJ and inaA are separated by 80 nucleotides inaA and yfaE are separated by 53 nucleotides
OKFHMN_23085: lysR - transcriptional regulator, at 4,495,808 to 4,496,686
lysR
OKFHMN_23090: araJ - MFS transporter, at 4,496,838 to 4,498,028
araJ
OKFHMN_23095: inaA - lipopolysaccharide kinase InaA, at 4,498,109 to 4,498,759
inaA
OKFHMN_23100: yfaE - ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE, at 4,498,813 to 4,499,067
yfaE
Position (kb) 4496
4497
4498
4499 Strain fitness (log2 ratio) -1
0
1
2
3 at 4495.968 kb on - strand, within lysR at 4496.107 kb on + strand, within lysR at 4496.549 kb on - strand, within lysR at 4496.891 kb on + strand at 4497.143 kb on + strand, within araJ at 4497.164 kb on + strand, within araJ at 4497.302 kb on + strand, within araJ at 4497.323 kb on + strand, within araJ at 4497.344 kb on + strand, within araJ at 4497.383 kb on + strand, within araJ at 4497.483 kb on - strand, within araJ at 4497.504 kb on + strand, within araJ at 4497.548 kb on + strand, within araJ at 4497.549 kb on - strand, within araJ at 4497.570 kb on - strand, within araJ at 4497.586 kb on - strand, within araJ at 4497.905 kb on + strand, within araJ at 4497.949 kb on + strand at 4498.007 kb on - strand at 4498.029 kb on + strand at 4498.068 kb on + strand at 4498.069 kb on - strand at 4498.070 kb on + strand at 4498.083 kb on + strand at 4498.241 kb on + strand, within inaA at 4498.245 kb on + strand, within inaA at 4498.283 kb on + strand, within inaA at 4498.544 kb on - strand, within inaA at 4498.571 kb on + strand, within inaA at 4498.571 kb on + strand, within inaA at 4498.586 kb on + strand, within inaA at 4498.670 kb on - strand, within inaA at 4498.742 kb on + strand at 4498.743 kb on - strand at 4498.748 kb on + strand at 4498.749 kb on - strand at 4498.757 kb on + strand at 4498.785 kb on - strand at 4498.803 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 4,495,968 - lysR OKFHMN_23085 0.18 +1.0 4,496,107 + lysR OKFHMN_23085 0.34 -1.2 4,496,549 - lysR OKFHMN_23085 0.84 +1.0 4,496,891 + +0.9 4,497,143 + araJ OKFHMN_23090 0.26 -1.1 4,497,164 + araJ OKFHMN_23090 0.27 -0.4 4,497,302 + araJ OKFHMN_23090 0.39 -0.6 4,497,323 + araJ OKFHMN_23090 0.41 -0.3 4,497,344 + araJ OKFHMN_23090 0.42 +0.1 4,497,383 + araJ OKFHMN_23090 0.46 -0.7 4,497,483 - araJ OKFHMN_23090 0.54 +0.2 4,497,504 + araJ OKFHMN_23090 0.56 +0.3 4,497,548 + araJ OKFHMN_23090 0.60 +0.9 4,497,549 - araJ OKFHMN_23090 0.60 +3.3 4,497,570 - araJ OKFHMN_23090 0.61 +0.8 4,497,586 - araJ OKFHMN_23090 0.63 +0.2 4,497,905 + araJ OKFHMN_23090 0.90 -1.6 4,497,949 + -0.2 4,498,007 - +1.2 4,498,029 + +0.5 4,498,068 + -0.1 4,498,069 - +0.0 4,498,070 + +0.2 4,498,083 + +1.3 4,498,241 + inaA OKFHMN_23095 0.20 +0.8 4,498,245 + inaA OKFHMN_23095 0.21 +0.2 4,498,283 + inaA OKFHMN_23095 0.27 -0.8 4,498,544 - inaA OKFHMN_23095 0.67 -0.2 4,498,571 + inaA OKFHMN_23095 0.71 +0.3 4,498,571 + inaA OKFHMN_23095 0.71 +0.1 4,498,586 + inaA OKFHMN_23095 0.73 +0.1 4,498,670 - inaA OKFHMN_23095 0.86 -0.2 4,498,742 + +0.6 4,498,743 - -0.8 4,498,748 + +0.6 4,498,749 - +2.8 4,498,757 + +1.8 4,498,785 - -1.4 4,498,803 + -0.5
Or see this region's nucleotide sequence