Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20815

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntproX and proW are separated by 56 nucleotidesproW and proV overlap by 8 nucleotides OKFHMN_20810: proX - glycine betaine/L-proline ABC transporter substrate-binding protein ProX, at 4,044,324 to 4,045,316 proX OKFHMN_20815: proW - glycine betaine/L-proline ABC transporter permease ProW, at 4,045,373 to 4,046,437 proW OKFHMN_20820: proV - glycine betaine/L-proline ABC transporter ATP-binding protein ProV, at 4,046,430 to 4,047,632 proV Position (kb) 4045 4046 4047Strain fitness (log2 ratio) -1 0 1 2at 4044.441 kb on - strand, within proXat 4044.441 kb on - strand, within proXat 4044.461 kb on + strand, within proXat 4044.461 kb on + strand, within proXat 4044.461 kb on + strand, within proXat 4044.461 kb on + strand, within proXat 4044.462 kb on - strand, within proXat 4044.530 kb on + strand, within proXat 4044.543 kb on - strand, within proXat 4044.672 kb on - strand, within proXat 4044.698 kb on - strand, within proXat 4044.724 kb on + strand, within proXat 4044.725 kb on - strand, within proXat 4044.758 kb on - strand, within proXat 4044.771 kb on - strand, within proXat 4044.782 kb on + strand, within proXat 4044.845 kb on + strand, within proXat 4044.845 kb on + strand, within proXat 4044.846 kb on - strand, within proXat 4044.856 kb on - strand, within proXat 4044.967 kb on + strand, within proXat 4044.968 kb on - strand, within proXat 4045.036 kb on + strand, within proXat 4045.037 kb on - strand, within proXat 4045.037 kb on - strand, within proXat 4045.137 kb on - strand, within proXat 4045.145 kb on + strand, within proXat 4045.146 kb on - strand, within proXat 4045.146 kb on - strand, within proXat 4045.146 kb on - strand, within proXat 4045.147 kb on + strand, within proXat 4045.148 kb on - strand, within proXat 4045.153 kb on - strand, within proXat 4045.229 kb on + strandat 4045.229 kb on + strandat 4045.274 kb on + strandat 4045.275 kb on - strandat 4045.308 kb on - strandat 4045.320 kb on + strandat 4045.343 kb on + strandat 4045.420 kb on - strandat 4045.606 kb on + strand, within proWat 4045.634 kb on - strand, within proWat 4045.833 kb on - strand, within proWat 4045.833 kb on - strand, within proWat 4045.833 kb on - strand, within proWat 4045.833 kb on - strand, within proWat 4045.855 kb on - strand, within proWat 4045.997 kb on - strand, within proWat 4046.129 kb on - strand, within proWat 4046.162 kb on - strand, within proWat 4046.458 kb on - strandat 4046.497 kb on + strandat 4046.498 kb on - strandat 4046.498 kb on - strandat 4046.498 kb on - strandat 4046.498 kb on - strandat 4046.646 kb on - strand, within proVat 4046.682 kb on - strand, within proVat 4046.855 kb on - strand, within proVat 4046.943 kb on - strand, within proVat 4047.283 kb on - strand, within proVat 4047.421 kb on - strand, within proV

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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4,044,441 - proX OKFHMN_20810 0.12 +0.7
4,044,441 - proX OKFHMN_20810 0.12 -0.1
4,044,461 + proX OKFHMN_20810 0.14 +0.9
4,044,461 + proX OKFHMN_20810 0.14 +1.4
4,044,461 + proX OKFHMN_20810 0.14 +0.2
4,044,461 + proX OKFHMN_20810 0.14 +1.0
4,044,462 - proX OKFHMN_20810 0.14 +0.6
4,044,530 + proX OKFHMN_20810 0.21 +0.6
4,044,543 - proX OKFHMN_20810 0.22 -0.1
4,044,672 - proX OKFHMN_20810 0.35 +0.8
4,044,698 - proX OKFHMN_20810 0.38 +1.6
4,044,724 + proX OKFHMN_20810 0.40 +1.2
4,044,725 - proX OKFHMN_20810 0.40 +0.6
4,044,758 - proX OKFHMN_20810 0.44 +1.0
4,044,771 - proX OKFHMN_20810 0.45 +0.9
4,044,782 + proX OKFHMN_20810 0.46 +2.5
4,044,845 + proX OKFHMN_20810 0.52 +0.8
4,044,845 + proX OKFHMN_20810 0.52 -1.6
4,044,846 - proX OKFHMN_20810 0.53 +1.5
4,044,856 - proX OKFHMN_20810 0.54 +1.0
4,044,967 + proX OKFHMN_20810 0.65 +0.5
4,044,968 - proX OKFHMN_20810 0.65 +1.9
4,045,036 + proX OKFHMN_20810 0.72 +0.7
4,045,037 - proX OKFHMN_20810 0.72 +0.4
4,045,037 - proX OKFHMN_20810 0.72 +0.9
4,045,137 - proX OKFHMN_20810 0.82 +0.2
4,045,145 + proX OKFHMN_20810 0.83 +0.7
4,045,146 - proX OKFHMN_20810 0.83 +0.3
4,045,146 - proX OKFHMN_20810 0.83 -0.5
4,045,146 - proX OKFHMN_20810 0.83 +0.4
4,045,147 + proX OKFHMN_20810 0.83 +0.2
4,045,148 - proX OKFHMN_20810 0.83 +1.9
4,045,153 - proX OKFHMN_20810 0.83 +0.7
4,045,229 + +2.2
4,045,229 + +0.1
4,045,274 + -0.9
4,045,275 - +0.0
4,045,308 - +0.7
4,045,320 + +0.2
4,045,343 + +1.3
4,045,420 - +1.0
4,045,606 + proW OKFHMN_20815 0.22 +0.9
4,045,634 - proW OKFHMN_20815 0.25 -0.3
4,045,833 - proW OKFHMN_20815 0.43 +0.9
4,045,833 - proW OKFHMN_20815 0.43 +0.8
4,045,833 - proW OKFHMN_20815 0.43 +0.1
4,045,833 - proW OKFHMN_20815 0.43 +0.9
4,045,855 - proW OKFHMN_20815 0.45 +0.4
4,045,997 - proW OKFHMN_20815 0.59 +1.0
4,046,129 - proW OKFHMN_20815 0.71 +0.8
4,046,162 - proW OKFHMN_20815 0.74 +0.5
4,046,458 - +0.7
4,046,497 + -0.3
4,046,498 - +0.7
4,046,498 - +1.9
4,046,498 - +2.3
4,046,498 - +1.0
4,046,646 - proV OKFHMN_20820 0.18 +1.1
4,046,682 - proV OKFHMN_20820 0.21 +0.6
4,046,855 - proV OKFHMN_20820 0.35 +1.9
4,046,943 - proV OKFHMN_20820 0.43 +0.7
4,047,283 - proV OKFHMN_20820 0.71 +0.8
4,047,421 - proV OKFHMN_20820 0.82 +0.6

Or see this region's nucleotide sequence