Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15960

Experiment: EV146

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EV146
3,098,563	+	xylA	OKFHMN_15955	0.32	+0.6
3,098,650	+	xylA	OKFHMN_15955	0.39	+1.2
3,098,650	+	xylA	OKFHMN_15955	0.39	+0.2
3,098,650	+	xylA	OKFHMN_15955	0.39	+0.2
3,098,690	+	xylA	OKFHMN_15955	0.42	+0.8
3,098,691	-	xylA	OKFHMN_15955	0.42	-0.1
3,098,773	+	xylA	OKFHMN_15955	0.48	-0.0
3,098,774	-	xylA	OKFHMN_15955	0.48	+0.9
3,098,795	-	xylA	OKFHMN_15955	0.50	+0.5
3,098,864	+	xylA	OKFHMN_15955	0.55	+0.2
3,098,864	+	xylA	OKFHMN_15955	0.55	+0.1
3,098,865	-	xylA	OKFHMN_15955	0.55	+0.3
3,098,865	-	xylA	OKFHMN_15955	0.55	+0.1
3,098,888	+	xylA	OKFHMN_15955	0.57	-0.3
3,098,889	-	xylA	OKFHMN_15955	0.57	+0.3
3,098,889	-	xylA	OKFHMN_15955	0.57	+0.3
3,099,104	+	xylA	OKFHMN_15955	0.73	-0.2
3,099,105	-	xylA	OKFHMN_15955	0.73	+0.5
3,099,162	+	xylA	OKFHMN_15955	0.77	-0.7
3,099,162	+	xylA	OKFHMN_15955	0.77	+0.1
3,099,163	-	xylA	OKFHMN_15955	0.77	+1.5
3,099,163	-	xylA	OKFHMN_15955	0.77	-0.1
3,099,175	+	xylA	OKFHMN_15955	0.78	+0.9
3,099,182	-	xylA	OKFHMN_15955	0.79	-0.3
3,099,182	-	xylA	OKFHMN_15955	0.79	+1.5
3,099,185	+	xylA	OKFHMN_15955	0.79	-1.0
3,099,185	+	xylA	OKFHMN_15955	0.79	+0.8
3,099,185	+	xylA	OKFHMN_15955	0.79	+1.1
3,099,185	+	xylA	OKFHMN_15955	0.79	+0.3
3,099,186	-	xylA	OKFHMN_15955	0.79	-1.8
3,099,368	+				+0.0
3,099,382	+				-1.0
3,099,383	-				+0.1
3,099,459	-				-0.5
3,099,531	+				+0.0
3,099,531	+				-0.4
3,099,535	+				+0.5
3,099,535	+				+0.3
3,099,535	+				-0.0
3,099,535	+				+0.2
3,099,535	+				-0.4
3,099,535	+				+1.1
3,099,535	+				+0.6
3,099,536	-				-0.4
3,099,536	-				-0.6
3,099,536	-				-0.5
3,099,536	-				-0.2
3,099,536	-				-1.2
3,099,776	+	xylB	OKFHMN_15960	0.17	+0.2
3,099,776	+	xylB	OKFHMN_15960	0.17	+0.8
3,099,777	-	xylB	OKFHMN_15960	0.17	+1.1
3,099,912	+	xylB	OKFHMN_15960	0.26	+0.4
3,099,921	+	xylB	OKFHMN_15960	0.27	-0.6
3,099,922	-	xylB	OKFHMN_15960	0.27	-0.2
3,099,977	+	xylB	OKFHMN_15960	0.31	+2.4
3,099,977	+	xylB	OKFHMN_15960	0.31	+0.8
3,099,978	-	xylB	OKFHMN_15960	0.31	-0.1
3,100,009	-	xylB	OKFHMN_15960	0.33	+0.2
3,100,033	-	xylB	OKFHMN_15960	0.34	-0.8
3,100,033	-	xylB	OKFHMN_15960	0.34	-0.1
3,100,112	+	xylB	OKFHMN_15960	0.40	-0.8
3,100,112	+	xylB	OKFHMN_15960	0.40	+0.5
3,100,113	-	xylB	OKFHMN_15960	0.40	+1.3
3,100,136	+	xylB	OKFHMN_15960	0.42	+0.3
3,100,138	+	xylB	OKFHMN_15960	0.42	-0.2
3,100,138	+	xylB	OKFHMN_15960	0.42	-0.2
3,100,155	+	xylB	OKFHMN_15960	0.43	+1.1
3,100,155	+	xylB	OKFHMN_15960	0.43	-0.1
3,100,170	-	xylB	OKFHMN_15960	0.44	+0.3
3,100,283	+	xylB	OKFHMN_15960	0.52	-0.4
3,100,307	-	xylB	OKFHMN_15960	0.53	-0.7
3,100,331	+	xylB	OKFHMN_15960	0.55	+0.6
3,100,332	-	xylB	OKFHMN_15960	0.55	+1.1
3,100,391	+	xylB	OKFHMN_15960	0.59	+0.6
3,100,392	-	xylB	OKFHMN_15960	0.59	-0.6
3,100,542	+	xylB	OKFHMN_15960	0.69	-0.2
3,100,543	-	xylB	OKFHMN_15960	0.69	-0.5
3,100,543	-	xylB	OKFHMN_15960	0.69	+2.1
3,100,543	-	xylB	OKFHMN_15960	0.69	-0.6
3,100,554	+	xylB	OKFHMN_15960	0.70	-0.4
3,100,555	-	xylB	OKFHMN_15960	0.70	+0.4
3,100,555	-	xylB	OKFHMN_15960	0.70	+1.2
3,100,642	+	xylB	OKFHMN_15960	0.76	-0.1
3,100,643	-	xylB	OKFHMN_15960	0.76	+2.1
3,100,687	-	xylB	OKFHMN_15960	0.79	-0.1
3,100,732	+	xylB	OKFHMN_15960	0.82	+0.3
3,100,732	+	xylB	OKFHMN_15960	0.82	-0.9
3,100,732	+	xylB	OKFHMN_15960	0.82	-0.9
3,100,877	+				+0.1
3,100,899	-				-0.1
3,100,915	+				+0.5
3,100,915	+				-0.4
3,100,958	-				+0.1
3,101,029	-				+0.4
3,101,029	-				+0.1
3,101,030	+				-1.2
3,101,030	+				-0.5
3,101,031	-				-0.3
3,101,032	+				-1.9
3,101,033	-				-0.1
3,101,059	-				-0.2
3,101,130	-				-0.1
3,101,139	-				-0.9
3,101,183	+				+0.4
3,101,296	+	yiaA	OKFHMN_15965	0.41	-0.0
3,101,296	+	yiaA	OKFHMN_15965	0.41	-1.9
3,101,297	-	yiaA	OKFHMN_15965	0.42	-0.2
3,101,361	-	yiaA	OKFHMN_15965	0.60	-0.7
3,101,413	-	yiaA	OKFHMN_15965	0.75	-0.2
3,101,503	+				+0.1
3,101,504	-				+0.0
3,101,504	-				+1.6
3,101,504	-				+1.1
3,101,504	-				+0.1
3,101,504	-				+1.0
3,101,513	-				+0.3
3,101,563	+				-0.7
3,101,564	-				-0.3
3,101,577	+				-0.3
3,101,578	-				+1.5
3,101,594	+	yiaA	OKFHMN_15970	0.12	+0.5
3,101,620	+	yiaA	OKFHMN_15970	0.18	-0.7
3,101,620	+	yiaA	OKFHMN_15970	0.18	-2.0
3,101,620	+	yiaA	OKFHMN_15970	0.18	-1.4
3,101,620	+	yiaA	OKFHMN_15970	0.18	-0.0
3,101,738	-	yiaA	OKFHMN_15970	0.45	-0.6
3,101,738	-	yiaA	OKFHMN_15970	0.45	-0.4
3,101,738	-	yiaA	OKFHMN_15970	0.45	-0.0
3,101,765	-	yiaA	OKFHMN_15970	0.51	+0.1
3,101,769	+	yiaA	OKFHMN_15970	0.52	-0.0
3,101,816	+	yiaA	OKFHMN_15970	0.63	-0.3
3,101,816	+	yiaA	OKFHMN_15970	0.63	+0.0
3,101,817	-	yiaA	OKFHMN_15970	0.63	-0.1
3,101,986	+				-1.0
3,101,986	+				+0.2