Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt 16S_rrna and hemG are separated by 380 nucleotides hemG and trkH are separated by 11 nucleotides trkH and yigZ are separated by 38 nucleotides yigZ and pepQ overlap by 1 nucleotides
OKFHMN_14220: 16S_rrna - 16S ribosomal RNA, at 2,741,847 to 2,743,388
_rrna
OKFHMN_14225: hemG - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 2,743,769 to 2,744,314
hemG
OKFHMN_14230: trkH - Trk system potassium transporter TrkH, at 2,744,326 to 2,745,777
trkH
OKFHMN_14235: yigZ - IMPACT family protein, at 2,745,816 to 2,746,430
yigZ
OKFHMN_14240: pepQ - Xaa-Pro dipeptidase, at 2,746,430 to 2,747,761
pepQ
Position (kb)
2744
2745
2746 Strain fitness (log2 ratio)
-1
0
1 at 2743.771 kb on - strand at 2744.316 kb on + strand at 2744.316 kb on + strand at 2744.317 kb on - strand at 2744.317 kb on - strand at 2744.317 kb on - strand at 2744.319 kb on + strand at 2744.319 kb on + strand at 2744.319 kb on + strand at 2744.320 kb on - strand at 2744.320 kb on - strand at 2744.320 kb on - strand at 2745.057 kb on + strand, within trkH at 2745.793 kb on - strand at 2745.793 kb on - strand at 2745.793 kb on - strand at 2745.944 kb on + strand, within yigZ at 2745.945 kb on - strand, within yigZ at 2745.996 kb on - strand, within yigZ at 2745.997 kb on + strand, within yigZ at 2745.997 kb on + strand, within yigZ at 2745.997 kb on + strand, within yigZ at 2745.998 kb on - strand, within yigZ at 2746.013 kb on + strand, within yigZ at 2746.014 kb on - strand, within yigZ at 2746.016 kb on - strand, within yigZ at 2746.016 kb on - strand, within yigZ at 2746.113 kb on + strand, within yigZ at 2746.126 kb on + strand, within yigZ at 2746.127 kb on - strand, within yigZ at 2746.171 kb on - strand, within yigZ at 2746.347 kb on - strand, within yigZ at 2746.347 kb on - strand, within yigZ at 2746.417 kb on - strand at 2746.599 kb on + strand, within pepQ at 2746.599 kb on + strand, within pepQ at 2746.599 kb on + strand, within pepQ at 2746.600 kb on - strand, within pepQ at 2746.600 kb on - strand, within pepQ at 2746.600 kb on - strand, within pepQ at 2746.619 kb on + strand, within pepQ at 2746.620 kb on - strand, within pepQ at 2746.642 kb on + strand, within pepQ
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 2,743,771 - -0.6 2,744,316 + +0.1 2,744,316 + -1.3 2,744,317 - +0.9 2,744,317 - +0.1 2,744,317 - +1.1 2,744,319 + -0.0 2,744,319 + -1.1 2,744,319 + -0.2 2,744,320 - -0.2 2,744,320 - -0.5 2,744,320 - -0.0 2,745,057 + trkH OKFHMN_14230 0.50 +0.1 2,745,793 - +0.2 2,745,793 - -0.5 2,745,793 - +0.7 2,745,944 + yigZ OKFHMN_14235 0.21 +0.0 2,745,945 - yigZ OKFHMN_14235 0.21 -0.9 2,745,996 - yigZ OKFHMN_14235 0.29 -0.2 2,745,997 + yigZ OKFHMN_14235 0.29 -0.6 2,745,997 + yigZ OKFHMN_14235 0.29 -0.9 2,745,997 + yigZ OKFHMN_14235 0.29 -1.5 2,745,998 - yigZ OKFHMN_14235 0.30 -0.8 2,746,013 + yigZ OKFHMN_14235 0.32 -0.0 2,746,014 - yigZ OKFHMN_14235 0.32 +0.5 2,746,016 - yigZ OKFHMN_14235 0.33 -0.2 2,746,016 - yigZ OKFHMN_14235 0.33 +0.3 2,746,113 + yigZ OKFHMN_14235 0.48 +0.2 2,746,126 + yigZ OKFHMN_14235 0.50 -0.5 2,746,127 - yigZ OKFHMN_14235 0.51 -0.9 2,746,171 - yigZ OKFHMN_14235 0.58 +0.4 2,746,347 - yigZ OKFHMN_14235 0.86 -0.0 2,746,347 - yigZ OKFHMN_14235 0.86 -0.6 2,746,417 - +0.7 2,746,599 + pepQ OKFHMN_14240 0.13 -0.5 2,746,599 + pepQ OKFHMN_14240 0.13 -0.5 2,746,599 + pepQ OKFHMN_14240 0.13 +0.1 2,746,600 - pepQ OKFHMN_14240 0.13 -0.3 2,746,600 - pepQ OKFHMN_14240 0.13 +0.0 2,746,600 - pepQ OKFHMN_14240 0.13 -0.9 2,746,619 + pepQ OKFHMN_14240 0.14 +0.4 2,746,620 - pepQ OKFHMN_14240 0.14 +0.6 2,746,642 + pepQ OKFHMN_14240 0.16 +0.4
Or see this region's nucleotide sequence