Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frwD and pflC are separated by 1 nucleotides pflC and pflD overlap by 35 nucleotides pflD and frwB are separated by 50 nucleotides frwB and frwC are separated by 14 nucleotides
OKFHMN_13610: frwD - PTS fructose-like transporter subunit IIB, at 2,620,681 to 2,621,022
frwD
OKFHMN_13615: pflC - [formate-C-acetyltransferase]-activating enzyme, at 2,621,024 to 2,621,902
pflC
OKFHMN_13620: pflD - formate C-acetyltransferase, at 2,621,868 to 2,624,165
pflD
OKFHMN_13625: frwB - PTS fructose-like transporter subunit IIB, at 2,624,216 to 2,624,536
frwB
OKFHMN_13630: frwC - PTS fructose transporter subunit EIIC, at 2,624,551 to 2,625,630
frwC
Position (kb)
2621
2622
2623
2624
2625 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2620.968 kb on + strand, within frwD at 2620.968 kb on + strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.974 kb on + strand, within frwD at 2620.974 kb on + strand, within frwD at 2620.975 kb on - strand, within frwD at 2620.975 kb on - strand, within frwD at 2621.016 kb on - strand at 2621.025 kb on + strand at 2621.375 kb on + strand, within pflC at 2621.786 kb on - strand, within pflC at 2621.786 kb on - strand, within pflC at 2621.869 kb on + strand at 2622.024 kb on - strand at 2622.024 kb on - strand at 2622.024 kb on - strand at 2622.044 kb on + strand at 2622.044 kb on + strand at 2622.045 kb on - strand at 2622.045 kb on - strand at 2622.084 kb on + strand at 2622.144 kb on - strand, within pflD at 2622.317 kb on - strand, within pflD at 2622.334 kb on + strand, within pflD at 2622.600 kb on + strand, within pflD at 2622.616 kb on + strand, within pflD at 2622.617 kb on - strand, within pflD at 2622.723 kb on - strand, within pflD at 2622.723 kb on - strand, within pflD at 2622.723 kb on - strand, within pflD at 2622.751 kb on + strand, within pflD at 2622.751 kb on + strand, within pflD at 2622.784 kb on - strand, within pflD at 2622.794 kb on - strand, within pflD at 2622.794 kb on - strand, within pflD at 2622.854 kb on + strand, within pflD at 2622.855 kb on - strand, within pflD at 2622.880 kb on + strand, within pflD at 2622.881 kb on - strand, within pflD at 2623.067 kb on + strand, within pflD at 2623.081 kb on - strand, within pflD at 2623.111 kb on + strand, within pflD at 2623.111 kb on + strand, within pflD at 2623.190 kb on - strand, within pflD at 2623.214 kb on - strand, within pflD at 2623.327 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.340 kb on + strand, within pflD at 2623.341 kb on - strand, within pflD at 2623.341 kb on - strand, within pflD at 2623.341 kb on - strand, within pflD at 2623.341 kb on - strand, within pflD at 2623.343 kb on - strand, within pflD at 2623.408 kb on + strand, within pflD at 2623.408 kb on + strand, within pflD at 2623.417 kb on - strand, within pflD at 2623.691 kb on + strand, within pflD at 2623.691 kb on + strand, within pflD at 2623.691 kb on + strand, within pflD at 2623.694 kb on + strand, within pflD at 2623.838 kb on + strand, within pflD at 2623.838 kb on + strand, within pflD at 2623.838 kb on + strand, within pflD at 2623.839 kb on - strand, within pflD at 2623.839 kb on - strand, within pflD at 2623.845 kb on - strand, within pflD at 2623.859 kb on + strand, within pflD at 2624.020 kb on + strand at 2624.020 kb on + strand at 2624.020 kb on + strand at 2624.021 kb on - strand at 2624.021 kb on - strand at 2624.046 kb on + strand at 2624.086 kb on + strand at 2624.086 kb on + strand at 2624.087 kb on - strand at 2624.154 kb on - strand at 2624.154 kb on - strand at 2624.217 kb on + strand at 2624.254 kb on + strand, within frwB at 2624.348 kb on - strand, within frwB at 2624.482 kb on + strand, within frwB at 2624.482 kb on + strand, within frwB at 2624.483 kb on - strand, within frwB at 2624.483 kb on - strand, within frwB at 2624.483 kb on - strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.484 kb on + strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.485 kb on - strand, within frwB at 2624.488 kb on + strand, within frwB at 2624.489 kb on - strand, within frwB at 2624.489 kb on - strand, within frwB at 2624.552 kb on + strand at 2624.552 kb on + strand at 2624.599 kb on - strand at 2624.682 kb on + strand, within frwC at 2624.682 kb on + strand, within frwC at 2624.684 kb on + strand, within frwC at 2624.695 kb on - strand, within frwC at 2624.767 kb on + strand, within frwC at 2624.767 kb on + strand, within frwC at 2624.768 kb on - strand, within frwC at 2624.768 kb on - strand, within frwC at 2624.768 kb on - strand, within frwC at 2624.807 kb on - strand, within frwC at 2624.807 kb on - strand, within frwC at 2624.807 kb on - strand, within frwC at 2624.813 kb on - strand, within frwC at 2624.991 kb on + strand, within frwC at 2624.992 kb on - strand, within frwC at 2624.994 kb on - strand, within frwC at 2624.994 kb on - strand, within frwC at 2624.994 kb on - strand, within frwC at 2625.096 kb on + strand, within frwC at 2625.157 kb on + strand, within frwC at 2625.157 kb on + strand, within frwC
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 2,620,968 + frwD OKFHMN_13610 0.84 -0.9 2,620,968 + frwD OKFHMN_13610 0.84 -0.5 2,620,969 - frwD OKFHMN_13610 0.84 +0.0 2,620,969 - frwD OKFHMN_13610 0.84 +0.3 2,620,969 - frwD OKFHMN_13610 0.84 -0.1 2,620,969 - frwD OKFHMN_13610 0.84 -1.1 2,620,969 - frwD OKFHMN_13610 0.84 +0.3 2,620,969 - frwD OKFHMN_13610 0.84 -1.0 2,620,970 + frwD OKFHMN_13610 0.85 +0.9 2,620,970 + frwD OKFHMN_13610 0.85 -0.4 2,620,970 + frwD OKFHMN_13610 0.85 +0.5 2,620,970 + frwD OKFHMN_13610 0.85 +0.4 2,620,970 + frwD OKFHMN_13610 0.85 +0.2 2,620,970 + frwD OKFHMN_13610 0.85 -0.2 2,620,970 + frwD OKFHMN_13610 0.85 -0.2 2,620,970 + frwD OKFHMN_13610 0.85 -0.5 2,620,970 + frwD OKFHMN_13610 0.85 +0.1 2,620,970 + frwD OKFHMN_13610 0.85 -0.6 2,620,970 + frwD OKFHMN_13610 0.85 -0.1 2,620,971 - frwD OKFHMN_13610 0.85 -1.0 2,620,971 - frwD OKFHMN_13610 0.85 -0.1 2,620,971 - frwD OKFHMN_13610 0.85 -1.4 2,620,971 - frwD OKFHMN_13610 0.85 +1.1 2,620,971 - frwD OKFHMN_13610 0.85 +0.7 2,620,971 - frwD OKFHMN_13610 0.85 -0.5 2,620,971 - frwD OKFHMN_13610 0.85 +0.0 2,620,971 - frwD OKFHMN_13610 0.85 +0.5 2,620,971 - frwD OKFHMN_13610 0.85 +0.2 2,620,974 + frwD OKFHMN_13610 0.86 -1.0 2,620,974 + frwD OKFHMN_13610 0.86 +0.1 2,620,975 - frwD OKFHMN_13610 0.86 +0.1 2,620,975 - frwD OKFHMN_13610 0.86 +0.4 2,621,016 - +2.1 2,621,025 + +0.0 2,621,375 + pflC OKFHMN_13615 0.40 -0.5 2,621,786 - pflC OKFHMN_13615 0.87 -0.4 2,621,786 - pflC OKFHMN_13615 0.87 +0.6 2,621,869 + +0.7 2,622,024 - -0.8 2,622,024 - -1.5 2,622,024 - +0.4 2,622,044 + -0.2 2,622,044 + -1.1 2,622,045 - -1.3 2,622,045 - +0.6 2,622,084 + -0.0 2,622,144 - pflD OKFHMN_13620 0.12 -0.5 2,622,317 - pflD OKFHMN_13620 0.20 -0.8 2,622,334 + pflD OKFHMN_13620 0.20 -0.2 2,622,600 + pflD OKFHMN_13620 0.32 +0.1 2,622,616 + pflD OKFHMN_13620 0.33 +1.1 2,622,617 - pflD OKFHMN_13620 0.33 -0.1 2,622,723 - pflD OKFHMN_13620 0.37 -0.5 2,622,723 - pflD OKFHMN_13620 0.37 +0.1 2,622,723 - pflD OKFHMN_13620 0.37 +0.2 2,622,751 + pflD OKFHMN_13620 0.38 +1.2 2,622,751 + pflD OKFHMN_13620 0.38 +0.3 2,622,784 - pflD OKFHMN_13620 0.40 +0.9 2,622,794 - pflD OKFHMN_13620 0.40 +0.1 2,622,794 - pflD OKFHMN_13620 0.40 -0.1 2,622,854 + pflD OKFHMN_13620 0.43 -1.3 2,622,855 - pflD OKFHMN_13620 0.43 -0.5 2,622,880 + pflD OKFHMN_13620 0.44 -0.8 2,622,881 - pflD OKFHMN_13620 0.44 +0.2 2,623,067 + pflD OKFHMN_13620 0.52 +0.3 2,623,081 - pflD OKFHMN_13620 0.53 -0.3 2,623,111 + pflD OKFHMN_13620 0.54 +0.5 2,623,111 + pflD OKFHMN_13620 0.54 -0.7 2,623,190 - pflD OKFHMN_13620 0.58 -0.6 2,623,214 - pflD OKFHMN_13620 0.59 +0.8 2,623,327 + pflD OKFHMN_13620 0.63 -2.1 2,623,340 + pflD OKFHMN_13620 0.64 -0.7 2,623,340 + pflD OKFHMN_13620 0.64 -0.5 2,623,340 + pflD OKFHMN_13620 0.64 +0.5 2,623,340 + pflD OKFHMN_13620 0.64 -0.2 2,623,340 + pflD OKFHMN_13620 0.64 -0.1 2,623,340 + pflD OKFHMN_13620 0.64 +0.3 2,623,340 + pflD OKFHMN_13620 0.64 -0.2 2,623,341 - pflD OKFHMN_13620 0.64 -0.3 2,623,341 - pflD OKFHMN_13620 0.64 +0.1 2,623,341 - pflD OKFHMN_13620 0.64 +0.3 2,623,341 - pflD OKFHMN_13620 0.64 +0.6 2,623,343 - pflD OKFHMN_13620 0.64 -1.1 2,623,408 + pflD OKFHMN_13620 0.67 -0.1 2,623,408 + pflD OKFHMN_13620 0.67 +1.3 2,623,417 - pflD OKFHMN_13620 0.67 -0.2 2,623,691 + pflD OKFHMN_13620 0.79 -0.1 2,623,691 + pflD OKFHMN_13620 0.79 +0.8 2,623,691 + pflD OKFHMN_13620 0.79 -0.7 2,623,694 + pflD OKFHMN_13620 0.79 +0.8 2,623,838 + pflD OKFHMN_13620 0.86 +0.1 2,623,838 + pflD OKFHMN_13620 0.86 +0.1 2,623,838 + pflD OKFHMN_13620 0.86 +0.5 2,623,839 - pflD OKFHMN_13620 0.86 +0.2 2,623,839 - pflD OKFHMN_13620 0.86 -0.2 2,623,845 - pflD OKFHMN_13620 0.86 +0.2 2,623,859 + pflD OKFHMN_13620 0.87 -1.6 2,624,020 + +0.8 2,624,020 + -0.3 2,624,020 + -0.1 2,624,021 - +1.1 2,624,021 - -0.8 2,624,046 + +0.3 2,624,086 + -1.2 2,624,086 + -1.0 2,624,087 - -1.2 2,624,154 - -0.9 2,624,154 - +0.3 2,624,217 + +0.5 2,624,254 + frwB OKFHMN_13625 0.12 +0.2 2,624,348 - frwB OKFHMN_13625 0.41 -0.2 2,624,482 + frwB OKFHMN_13625 0.83 -0.0 2,624,482 + frwB OKFHMN_13625 0.83 +0.0 2,624,483 - frwB OKFHMN_13625 0.83 -1.0 2,624,483 - frwB OKFHMN_13625 0.83 -0.1 2,624,483 - frwB OKFHMN_13625 0.83 +0.1 2,624,484 + frwB OKFHMN_13625 0.83 -0.1 2,624,484 + frwB OKFHMN_13625 0.83 -0.1 2,624,484 + frwB OKFHMN_13625 0.83 -0.5 2,624,484 + frwB OKFHMN_13625 0.83 +0.1 2,624,484 + frwB OKFHMN_13625 0.83 -0.1 2,624,484 + frwB OKFHMN_13625 0.83 -1.3 2,624,484 + frwB OKFHMN_13625 0.83 +0.2 2,624,484 + frwB OKFHMN_13625 0.83 -0.9 2,624,484 + frwB OKFHMN_13625 0.83 +1.1 2,624,484 + frwB OKFHMN_13625 0.83 -0.5 2,624,484 + frwB OKFHMN_13625 0.83 -1.5 2,624,485 - frwB OKFHMN_13625 0.84 -0.5 2,624,485 - frwB OKFHMN_13625 0.84 -0.0 2,624,485 - frwB OKFHMN_13625 0.84 +0.8 2,624,485 - frwB OKFHMN_13625 0.84 -0.3 2,624,485 - frwB OKFHMN_13625 0.84 -0.3 2,624,485 - frwB OKFHMN_13625 0.84 -0.5 2,624,485 - frwB OKFHMN_13625 0.84 +0.4 2,624,485 - frwB OKFHMN_13625 0.84 -1.1 2,624,485 - frwB OKFHMN_13625 0.84 +0.2 2,624,485 - frwB OKFHMN_13625 0.84 -0.2 2,624,485 - frwB OKFHMN_13625 0.84 -0.6 2,624,485 - frwB OKFHMN_13625 0.84 +0.8 2,624,485 - frwB OKFHMN_13625 0.84 +0.0 2,624,485 - frwB OKFHMN_13625 0.84 -0.0 2,624,488 + frwB OKFHMN_13625 0.85 -0.5 2,624,489 - frwB OKFHMN_13625 0.85 +0.4 2,624,489 - frwB OKFHMN_13625 0.85 -0.1 2,624,552 + +0.2 2,624,552 + -0.2 2,624,599 - +1.0 2,624,682 + frwC OKFHMN_13630 0.12 -1.3 2,624,682 + frwC OKFHMN_13630 0.12 -0.3 2,624,684 + frwC OKFHMN_13630 0.12 +0.0 2,624,695 - frwC OKFHMN_13630 0.13 -0.2 2,624,767 + frwC OKFHMN_13630 0.20 -0.5 2,624,767 + frwC OKFHMN_13630 0.20 -0.2 2,624,768 - frwC OKFHMN_13630 0.20 +0.0 2,624,768 - frwC OKFHMN_13630 0.20 -0.5 2,624,768 - frwC OKFHMN_13630 0.20 -0.2 2,624,807 - frwC OKFHMN_13630 0.24 +1.0 2,624,807 - frwC OKFHMN_13630 0.24 +0.5 2,624,807 - frwC OKFHMN_13630 0.24 -0.3 2,624,813 - frwC OKFHMN_13630 0.24 -0.1 2,624,991 + frwC OKFHMN_13630 0.41 -0.1 2,624,992 - frwC OKFHMN_13630 0.41 -0.3 2,624,994 - frwC OKFHMN_13630 0.41 -0.7 2,624,994 - frwC OKFHMN_13630 0.41 -0.8 2,624,994 - frwC OKFHMN_13630 0.41 -0.3 2,625,096 + frwC OKFHMN_13630 0.50 +0.7 2,625,157 + frwC OKFHMN_13630 0.56 -0.4 2,625,157 + frwC OKFHMN_13630 0.56 +0.4
Or see this region's nucleotide sequence