Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13610

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyijO and frwD overlap by 14 nucleotidesfrwD and pflC are separated by 1 nucleotidespflC and pflD overlap by 35 nucleotides OKFHMN_13605: yijO - Uncharacterized HTH-type transcriptional regulator YijO, at 2,619,843 to 2,620,694 yijO OKFHMN_13610: frwD - PTS fructose-like transporter subunit IIB, at 2,620,681 to 2,621,022 frwD OKFHMN_13615: pflC - [formate-C-acetyltransferase]-activating enzyme, at 2,621,024 to 2,621,902 pflC OKFHMN_13620: pflD - formate C-acetyltransferase, at 2,621,868 to 2,624,165 pflD Position (kb) 2620 2621 2622Strain fitness (log2 ratio) -1 0 1 2at 2619.733 kb on + strandat 2619.733 kb on + strandat 2619.832 kb on - strandat 2619.832 kb on - strandat 2619.840 kb on - strandat 2619.847 kb on - strandat 2619.861 kb on + strandat 2619.862 kb on - strandat 2619.862 kb on - strandat 2619.862 kb on - strandat 2619.862 kb on - strandat 2620.021 kb on + strand, within yijOat 2620.041 kb on + strand, within yijOat 2620.041 kb on + strand, within yijOat 2620.042 kb on - strand, within yijOat 2620.042 kb on - strand, within yijOat 2620.089 kb on - strand, within yijOat 2620.089 kb on - strand, within yijOat 2620.097 kb on + strand, within yijOat 2620.204 kb on + strand, within yijOat 2620.362 kb on - strand, within yijOat 2620.362 kb on - strand, within yijOat 2620.374 kb on - strand, within yijOat 2620.374 kb on - strand, within yijOat 2620.387 kb on - strand, within yijOat 2620.387 kb on - strand, within yijOat 2620.428 kb on + strand, within yijOat 2620.428 kb on + strand, within yijOat 2620.428 kb on + strand, within yijOat 2620.429 kb on - strand, within yijOat 2620.431 kb on - strand, within yijOat 2620.443 kb on + strand, within yijOat 2620.443 kb on + strand, within yijOat 2620.443 kb on + strand, within yijOat 2620.444 kb on - strand, within yijOat 2620.485 kb on - strand, within yijOat 2620.520 kb on + strand, within yijOat 2620.521 kb on - strand, within yijOat 2620.521 kb on - strand, within yijOat 2620.521 kb on - strand, within yijOat 2620.540 kb on - strand, within yijOat 2620.552 kb on + strand, within yijOat 2620.641 kb on + strandat 2620.692 kb on + strandat 2620.693 kb on - strandat 2620.693 kb on - strandat 2620.770 kb on - strand, within frwDat 2620.968 kb on + strand, within frwDat 2620.968 kb on + strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.969 kb on - strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.970 kb on + strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.971 kb on - strand, within frwDat 2620.974 kb on + strand, within frwDat 2620.974 kb on + strand, within frwDat 2620.975 kb on - strand, within frwDat 2620.975 kb on - strand, within frwDat 2621.016 kb on - strandat 2621.025 kb on + strandat 2621.375 kb on + strand, within pflCat 2621.786 kb on - strand, within pflCat 2621.786 kb on - strand, within pflCat 2621.869 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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2,619,733 + -0.5
2,619,733 + -0.7
2,619,832 - +0.2
2,619,832 - +0.1
2,619,840 - +0.3
2,619,847 - -1.3
2,619,861 + +0.2
2,619,862 - -0.3
2,619,862 - +0.7
2,619,862 - +0.3
2,619,862 - -0.4
2,620,021 + yijO OKFHMN_13605 0.21 -0.6
2,620,041 + yijO OKFHMN_13605 0.23 +0.2
2,620,041 + yijO OKFHMN_13605 0.23 -0.0
2,620,042 - yijO OKFHMN_13605 0.23 -0.0
2,620,042 - yijO OKFHMN_13605 0.23 +0.2
2,620,089 - yijO OKFHMN_13605 0.29 +0.2
2,620,089 - yijO OKFHMN_13605 0.29 -0.2
2,620,097 + yijO OKFHMN_13605 0.30 -0.3
2,620,204 + yijO OKFHMN_13605 0.42 +0.7
2,620,362 - yijO OKFHMN_13605 0.61 +1.0
2,620,362 - yijO OKFHMN_13605 0.61 +0.9
2,620,374 - yijO OKFHMN_13605 0.62 -1.2
2,620,374 - yijO OKFHMN_13605 0.62 +0.4
2,620,387 - yijO OKFHMN_13605 0.64 -0.1
2,620,387 - yijO OKFHMN_13605 0.64 -0.4
2,620,428 + yijO OKFHMN_13605 0.69 -0.5
2,620,428 + yijO OKFHMN_13605 0.69 +2.1
2,620,428 + yijO OKFHMN_13605 0.69 -0.5
2,620,429 - yijO OKFHMN_13605 0.69 +0.2
2,620,431 - yijO OKFHMN_13605 0.69 +0.4
2,620,443 + yijO OKFHMN_13605 0.70 +0.6
2,620,443 + yijO OKFHMN_13605 0.70 -0.0
2,620,443 + yijO OKFHMN_13605 0.70 +0.8
2,620,444 - yijO OKFHMN_13605 0.71 -0.3
2,620,485 - yijO OKFHMN_13605 0.75 -0.4
2,620,520 + yijO OKFHMN_13605 0.79 -0.0
2,620,521 - yijO OKFHMN_13605 0.80 -0.5
2,620,521 - yijO OKFHMN_13605 0.80 +1.1
2,620,521 - yijO OKFHMN_13605 0.80 +0.3
2,620,540 - yijO OKFHMN_13605 0.82 +1.0
2,620,552 + yijO OKFHMN_13605 0.83 -0.0
2,620,641 + -0.8
2,620,692 + +0.1
2,620,693 - +0.4
2,620,693 - +0.1
2,620,770 - frwD OKFHMN_13610 0.26 +0.5
2,620,968 + frwD OKFHMN_13610 0.84 -0.9
2,620,968 + frwD OKFHMN_13610 0.84 -0.5
2,620,969 - frwD OKFHMN_13610 0.84 +0.0
2,620,969 - frwD OKFHMN_13610 0.84 +0.3
2,620,969 - frwD OKFHMN_13610 0.84 -0.1
2,620,969 - frwD OKFHMN_13610 0.84 -1.1
2,620,969 - frwD OKFHMN_13610 0.84 +0.3
2,620,969 - frwD OKFHMN_13610 0.84 -1.0
2,620,970 + frwD OKFHMN_13610 0.85 +0.9
2,620,970 + frwD OKFHMN_13610 0.85 -0.4
2,620,970 + frwD OKFHMN_13610 0.85 +0.5
2,620,970 + frwD OKFHMN_13610 0.85 +0.4
2,620,970 + frwD OKFHMN_13610 0.85 +0.2
2,620,970 + frwD OKFHMN_13610 0.85 -0.2
2,620,970 + frwD OKFHMN_13610 0.85 -0.2
2,620,970 + frwD OKFHMN_13610 0.85 -0.5
2,620,970 + frwD OKFHMN_13610 0.85 +0.1
2,620,970 + frwD OKFHMN_13610 0.85 -0.6
2,620,970 + frwD OKFHMN_13610 0.85 -0.1
2,620,971 - frwD OKFHMN_13610 0.85 -1.0
2,620,971 - frwD OKFHMN_13610 0.85 -0.1
2,620,971 - frwD OKFHMN_13610 0.85 -1.4
2,620,971 - frwD OKFHMN_13610 0.85 +1.1
2,620,971 - frwD OKFHMN_13610 0.85 +0.7
2,620,971 - frwD OKFHMN_13610 0.85 -0.5
2,620,971 - frwD OKFHMN_13610 0.85 +0.0
2,620,971 - frwD OKFHMN_13610 0.85 +0.5
2,620,971 - frwD OKFHMN_13610 0.85 +0.2
2,620,974 + frwD OKFHMN_13610 0.86 -1.0
2,620,974 + frwD OKFHMN_13610 0.86 +0.1
2,620,975 - frwD OKFHMN_13610 0.86 +0.1
2,620,975 - frwD OKFHMN_13610 0.86 +0.4
2,621,016 - +2.1
2,621,025 + +0.0
2,621,375 + pflC OKFHMN_13615 0.40 -0.5
2,621,786 - pflC OKFHMN_13615 0.87 -0.4
2,621,786 - pflC OKFHMN_13615 0.87 +0.6
2,621,869 + +0.7

Or see this region's nucleotide sequence