Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yijO and frwD overlap by 14 nucleotides frwD and pflC are separated by 1 nucleotides pflC and pflD overlap by 35 nucleotides
OKFHMN_13605: yijO - Uncharacterized HTH-type transcriptional regulator YijO, at 2,619,843 to 2,620,694
yijO
OKFHMN_13610: frwD - PTS fructose-like transporter subunit IIB, at 2,620,681 to 2,621,022
frwD
OKFHMN_13615: pflC - [formate-C-acetyltransferase]-activating enzyme, at 2,621,024 to 2,621,902
pflC
OKFHMN_13620: pflD - formate C-acetyltransferase, at 2,621,868 to 2,624,165
pflD
Position (kb)
2620
2621
2622 Strain fitness (log2 ratio)
-1
0
1
2 at 2619.733 kb on + strand at 2619.733 kb on + strand at 2619.832 kb on - strand at 2619.832 kb on - strand at 2619.840 kb on - strand at 2619.847 kb on - strand at 2619.861 kb on + strand at 2619.862 kb on - strand at 2619.862 kb on - strand at 2619.862 kb on - strand at 2619.862 kb on - strand at 2620.021 kb on + strand, within yijO at 2620.041 kb on + strand, within yijO at 2620.041 kb on + strand, within yijO at 2620.042 kb on - strand, within yijO at 2620.042 kb on - strand, within yijO at 2620.089 kb on - strand, within yijO at 2620.089 kb on - strand, within yijO at 2620.097 kb on + strand, within yijO at 2620.204 kb on + strand, within yijO at 2620.362 kb on - strand, within yijO at 2620.362 kb on - strand, within yijO at 2620.374 kb on - strand, within yijO at 2620.374 kb on - strand, within yijO at 2620.387 kb on - strand, within yijO at 2620.387 kb on - strand, within yijO at 2620.428 kb on + strand, within yijO at 2620.428 kb on + strand, within yijO at 2620.428 kb on + strand, within yijO at 2620.429 kb on - strand, within yijO at 2620.431 kb on - strand, within yijO at 2620.443 kb on + strand, within yijO at 2620.443 kb on + strand, within yijO at 2620.443 kb on + strand, within yijO at 2620.444 kb on - strand, within yijO at 2620.485 kb on - strand, within yijO at 2620.520 kb on + strand, within yijO at 2620.521 kb on - strand, within yijO at 2620.521 kb on - strand, within yijO at 2620.521 kb on - strand, within yijO at 2620.540 kb on - strand, within yijO at 2620.552 kb on + strand, within yijO at 2620.641 kb on + strand at 2620.692 kb on + strand at 2620.693 kb on - strand at 2620.693 kb on - strand at 2620.770 kb on - strand, within frwD at 2620.968 kb on + strand, within frwD at 2620.968 kb on + strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.969 kb on - strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.970 kb on + strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.971 kb on - strand, within frwD at 2620.974 kb on + strand, within frwD at 2620.974 kb on + strand, within frwD at 2620.975 kb on - strand, within frwD at 2620.975 kb on - strand, within frwD at 2621.016 kb on - strand at 2621.025 kb on + strand at 2621.375 kb on + strand, within pflC at 2621.786 kb on - strand, within pflC at 2621.786 kb on - strand, within pflC at 2621.869 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 2,619,733 + -0.5 2,619,733 + -0.7 2,619,832 - +0.2 2,619,832 - +0.1 2,619,840 - +0.3 2,619,847 - -1.3 2,619,861 + +0.2 2,619,862 - -0.3 2,619,862 - +0.7 2,619,862 - +0.3 2,619,862 - -0.4 2,620,021 + yijO OKFHMN_13605 0.21 -0.6 2,620,041 + yijO OKFHMN_13605 0.23 +0.2 2,620,041 + yijO OKFHMN_13605 0.23 -0.0 2,620,042 - yijO OKFHMN_13605 0.23 -0.0 2,620,042 - yijO OKFHMN_13605 0.23 +0.2 2,620,089 - yijO OKFHMN_13605 0.29 +0.2 2,620,089 - yijO OKFHMN_13605 0.29 -0.2 2,620,097 + yijO OKFHMN_13605 0.30 -0.3 2,620,204 + yijO OKFHMN_13605 0.42 +0.7 2,620,362 - yijO OKFHMN_13605 0.61 +1.0 2,620,362 - yijO OKFHMN_13605 0.61 +0.9 2,620,374 - yijO OKFHMN_13605 0.62 -1.2 2,620,374 - yijO OKFHMN_13605 0.62 +0.4 2,620,387 - yijO OKFHMN_13605 0.64 -0.1 2,620,387 - yijO OKFHMN_13605 0.64 -0.4 2,620,428 + yijO OKFHMN_13605 0.69 -0.5 2,620,428 + yijO OKFHMN_13605 0.69 +2.1 2,620,428 + yijO OKFHMN_13605 0.69 -0.5 2,620,429 - yijO OKFHMN_13605 0.69 +0.2 2,620,431 - yijO OKFHMN_13605 0.69 +0.4 2,620,443 + yijO OKFHMN_13605 0.70 +0.6 2,620,443 + yijO OKFHMN_13605 0.70 -0.0 2,620,443 + yijO OKFHMN_13605 0.70 +0.8 2,620,444 - yijO OKFHMN_13605 0.71 -0.3 2,620,485 - yijO OKFHMN_13605 0.75 -0.4 2,620,520 + yijO OKFHMN_13605 0.79 -0.0 2,620,521 - yijO OKFHMN_13605 0.80 -0.5 2,620,521 - yijO OKFHMN_13605 0.80 +1.1 2,620,521 - yijO OKFHMN_13605 0.80 +0.3 2,620,540 - yijO OKFHMN_13605 0.82 +1.0 2,620,552 + yijO OKFHMN_13605 0.83 -0.0 2,620,641 + -0.8 2,620,692 + +0.1 2,620,693 - +0.4 2,620,693 - +0.1 2,620,770 - frwD OKFHMN_13610 0.26 +0.5 2,620,968 + frwD OKFHMN_13610 0.84 -0.9 2,620,968 + frwD OKFHMN_13610 0.84 -0.5 2,620,969 - frwD OKFHMN_13610 0.84 +0.0 2,620,969 - frwD OKFHMN_13610 0.84 +0.3 2,620,969 - frwD OKFHMN_13610 0.84 -0.1 2,620,969 - frwD OKFHMN_13610 0.84 -1.1 2,620,969 - frwD OKFHMN_13610 0.84 +0.3 2,620,969 - frwD OKFHMN_13610 0.84 -1.0 2,620,970 + frwD OKFHMN_13610 0.85 +0.9 2,620,970 + frwD OKFHMN_13610 0.85 -0.4 2,620,970 + frwD OKFHMN_13610 0.85 +0.5 2,620,970 + frwD OKFHMN_13610 0.85 +0.4 2,620,970 + frwD OKFHMN_13610 0.85 +0.2 2,620,970 + frwD OKFHMN_13610 0.85 -0.2 2,620,970 + frwD OKFHMN_13610 0.85 -0.2 2,620,970 + frwD OKFHMN_13610 0.85 -0.5 2,620,970 + frwD OKFHMN_13610 0.85 +0.1 2,620,970 + frwD OKFHMN_13610 0.85 -0.6 2,620,970 + frwD OKFHMN_13610 0.85 -0.1 2,620,971 - frwD OKFHMN_13610 0.85 -1.0 2,620,971 - frwD OKFHMN_13610 0.85 -0.1 2,620,971 - frwD OKFHMN_13610 0.85 -1.4 2,620,971 - frwD OKFHMN_13610 0.85 +1.1 2,620,971 - frwD OKFHMN_13610 0.85 +0.7 2,620,971 - frwD OKFHMN_13610 0.85 -0.5 2,620,971 - frwD OKFHMN_13610 0.85 +0.0 2,620,971 - frwD OKFHMN_13610 0.85 +0.5 2,620,971 - frwD OKFHMN_13610 0.85 +0.2 2,620,974 + frwD OKFHMN_13610 0.86 -1.0 2,620,974 + frwD OKFHMN_13610 0.86 +0.1 2,620,975 - frwD OKFHMN_13610 0.86 +0.1 2,620,975 - frwD OKFHMN_13610 0.86 +0.4 2,621,016 - +2.1 2,621,025 + +0.0 2,621,375 + pflC OKFHMN_13615 0.40 -0.5 2,621,786 - pflC OKFHMN_13615 0.87 -0.4 2,621,786 - pflC OKFHMN_13615 0.87 +0.6 2,621,869 + +0.7
Or see this region's nucleotide sequence