Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12975

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnleG6-2 and nleG-3 are separated by 72 nucleotidesnleG-3 and OKFHMN_12975 are separated by 111 nucleotidesOKFHMN_12975 and OKFHMN_12980 are separated by 1 nucleotides OKFHMN_12965: nleG6-2 - DUF1076 domain-containing protein, at 2,489,193 to 2,489,822 nleG6-2 OKFHMN_12970: nleG-3 - T3SS effector NleG family protein, at 2,489,895 to 2,490,467 nleG-3 OKFHMN_12975: OKFHMN_12975 - phage tail protein, at 2,490,579 to 2,490,848 _12975 OKFHMN_12980: OKFHMN_12980 - phage tail protein, at 2,490,850 to 2,492,163 _12980 Position (kb) 2490 2491Strain fitness (log2 ratio) -1 0 1at 2490.248 kb on + strand, within nleG-3at 2490.329 kb on + strand, within nleG-3at 2490.339 kb on - strand, within nleG-3at 2490.341 kb on - strand, within nleG-3at 2490.341 kb on - strand, within nleG-3at 2490.448 kb on + strandat 2490.448 kb on + strandat 2490.448 kb on + strandat 2490.449 kb on - strandat 2490.449 kb on - strandat 2490.453 kb on + strandat 2490.454 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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2,490,248 + nleG-3 OKFHMN_12970 0.62 -0.7
2,490,329 + nleG-3 OKFHMN_12970 0.76 +0.5
2,490,339 - nleG-3 OKFHMN_12970 0.77 +0.5
2,490,341 - nleG-3 OKFHMN_12970 0.78 +0.8
2,490,341 - nleG-3 OKFHMN_12970 0.78 +0.3
2,490,448 + -0.3
2,490,448 + -0.5
2,490,448 + +0.2
2,490,449 - -0.2
2,490,449 - -0.2
2,490,453 + -1.1
2,490,454 - +0.5

Or see this region's nucleotide sequence