Strain Fitness in Escherichia coli ECRC100 around OKFHMN_11365

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlgoD and lgoR are separated by 138 nucleotideslgoR and lgoT are separated by 214 nucleotides OKFHMN_11360: lgoD - L-galactonate oxidoreductase, at 2,146,252 to 2,147,274 lgoD OKFHMN_11365: lgoR - putative HTH-type transcriptional regulator LgoR, at 2,147,413 to 2,148,327 lgoR OKFHMN_11370: lgoT - putative L-galactonate transporter, at 2,148,542 to 2,149,903 lgoT Position (kb) 2147 2148 2149Strain fitness (log2 ratio) -1 0 1 2at 2146.502 kb on - strand, within lgoDat 2146.558 kb on - strand, within lgoDat 2146.828 kb on - strand, within lgoDat 2146.866 kb on + strand, within lgoDat 2146.908 kb on - strand, within lgoDat 2147.302 kb on + strandat 2147.412 kb on + strandat 2147.525 kb on - strand, within lgoRat 2147.542 kb on - strand, within lgoRat 2147.554 kb on - strand, within lgoRat 2147.586 kb on - strand, within lgoRat 2147.605 kb on + strand, within lgoRat 2147.606 kb on - strand, within lgoRat 2147.610 kb on + strand, within lgoRat 2147.650 kb on - strand, within lgoRat 2147.709 kb on - strand, within lgoRat 2147.797 kb on + strand, within lgoRat 2147.798 kb on - strand, within lgoRat 2147.821 kb on - strand, within lgoRat 2147.879 kb on - strand, within lgoRat 2147.879 kb on - strand, within lgoRat 2148.025 kb on - strand, within lgoRat 2148.178 kb on - strand, within lgoRat 2148.199 kb on - strand, within lgoRat 2148.199 kb on - strand, within lgoRat 2148.316 kb on + strandat 2148.325 kb on + strandat 2148.351 kb on - strandat 2148.450 kb on + strandat 2148.763 kb on - strand, within lgoTat 2148.763 kb on - strand, within lgoTat 2148.850 kb on + strand, within lgoTat 2148.851 kb on - strand, within lgoTat 2149.067 kb on - strand, within lgoTat 2149.067 kb on - strand, within lgoTat 2149.138 kb on + strand, within lgoTat 2149.139 kb on - strand, within lgoTat 2149.181 kb on + strand, within lgoTat 2149.181 kb on + strand, within lgoTat 2149.181 kb on + strand, within lgoTat 2149.182 kb on - strand, within lgoTat 2149.183 kb on + strand, within lgoTat 2149.184 kb on - strand, within lgoTat 2149.184 kb on - strand, within lgoTat 2149.209 kb on + strand, within lgoTat 2149.210 kb on - strand, within lgoTat 2149.235 kb on + strand, within lgoTat 2149.235 kb on + strand, within lgoTat 2149.236 kb on - strand, within lgoT

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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2,146,502 - lgoD OKFHMN_11360 0.24 +0.6
2,146,558 - lgoD OKFHMN_11360 0.30 +0.0
2,146,828 - lgoD OKFHMN_11360 0.56 -0.0
2,146,866 + lgoD OKFHMN_11360 0.60 +0.4
2,146,908 - lgoD OKFHMN_11360 0.64 -0.7
2,147,302 + -0.8
2,147,412 + -0.8
2,147,525 - lgoR OKFHMN_11365 0.12 +0.4
2,147,542 - lgoR OKFHMN_11365 0.14 +1.1
2,147,554 - lgoR OKFHMN_11365 0.15 -0.9
2,147,586 - lgoR OKFHMN_11365 0.19 +0.5
2,147,605 + lgoR OKFHMN_11365 0.21 -0.6
2,147,606 - lgoR OKFHMN_11365 0.21 -1.6
2,147,610 + lgoR OKFHMN_11365 0.22 +0.0
2,147,650 - lgoR OKFHMN_11365 0.26 +0.6
2,147,709 - lgoR OKFHMN_11365 0.32 +1.1
2,147,797 + lgoR OKFHMN_11365 0.42 +0.1
2,147,798 - lgoR OKFHMN_11365 0.42 -0.1
2,147,821 - lgoR OKFHMN_11365 0.45 -0.5
2,147,879 - lgoR OKFHMN_11365 0.51 +0.8
2,147,879 - lgoR OKFHMN_11365 0.51 +0.2
2,148,025 - lgoR OKFHMN_11365 0.67 -0.1
2,148,178 - lgoR OKFHMN_11365 0.84 +2.1
2,148,199 - lgoR OKFHMN_11365 0.86 +0.4
2,148,199 - lgoR OKFHMN_11365 0.86 -0.9
2,148,316 + +0.4
2,148,325 + +0.1
2,148,351 - -0.8
2,148,450 + -0.7
2,148,763 - lgoT OKFHMN_11370 0.16 +0.1
2,148,763 - lgoT OKFHMN_11370 0.16 -0.2
2,148,850 + lgoT OKFHMN_11370 0.23 +0.4
2,148,851 - lgoT OKFHMN_11370 0.23 -0.8
2,149,067 - lgoT OKFHMN_11370 0.39 -0.2
2,149,067 - lgoT OKFHMN_11370 0.39 -0.9
2,149,138 + lgoT OKFHMN_11370 0.44 +0.4
2,149,139 - lgoT OKFHMN_11370 0.44 -0.1
2,149,181 + lgoT OKFHMN_11370 0.47 -0.2
2,149,181 + lgoT OKFHMN_11370 0.47 +0.7
2,149,181 + lgoT OKFHMN_11370 0.47 -0.2
2,149,182 - lgoT OKFHMN_11370 0.47 +0.5
2,149,183 + lgoT OKFHMN_11370 0.47 +0.4
2,149,184 - lgoT OKFHMN_11370 0.47 -0.3
2,149,184 - lgoT OKFHMN_11370 0.47 -0.6
2,149,209 + lgoT OKFHMN_11370 0.49 +1.0
2,149,210 - lgoT OKFHMN_11370 0.49 -0.5
2,149,235 + lgoT OKFHMN_11370 0.51 -0.3
2,149,235 + lgoT OKFHMN_11370 0.51 -0.2
2,149,236 - lgoT OKFHMN_11370 0.51 +0.5

Or see this region's nucleotide sequence