Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10040

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt23S_rrna and Ala_trna are separated by 183 nucleotidesAla_trna and Ile_trna are separated by 42 nucleotidesIle_trna and 16S_rrna are separated by 68 nucleotides16S_rrna and gmhB are separated by 363 nucleotides OKFHMN_10020: 23S_rrna - 23S ribosomal RNA, at 1,871,200 to 1,874,102 _rrna OKFHMN_10030: Ala_trna - tRNA-Ala(tgc), at 1,874,286 to 1,874,361 _trna OKFHMN_10035: Ile_trna - tRNA-Ile(gat), at 1,874,404 to 1,874,480 _trna OKFHMN_10040: 16S_rrna - 16S ribosomal RNA, at 1,874,549 to 1,876,090 _rrna OKFHMN_10045: gmhB - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 1,876,454 to 1,877,029 gmhB Position (kb) 1874 1875 1876 1877Strain fitness (log2 ratio) -2 -1 0 1 2at 1876.389 kb on - strandat 1876.390 kb on + strandat 1876.547 kb on - strand, within gmhBat 1876.610 kb on - strand, within gmhBat 1876.634 kb on - strand, within gmhBat 1876.635 kb on + strand, within gmhBat 1876.635 kb on + strand, within gmhBat 1876.655 kb on - strand, within gmhBat 1876.761 kb on + strand, within gmhBat 1876.761 kb on + strand, within gmhBat 1876.761 kb on + strand, within gmhBat 1876.762 kb on - strand, within gmhBat 1876.766 kb on - strand, within gmhBat 1876.936 kb on + strand, within gmhBat 1876.937 kb on - strand, within gmhBat 1876.965 kb on + strand, within gmhBat 1876.966 kb on - strand, within gmhBat 1877.034 kb on + strandat 1877.035 kb on - strandat 1877.035 kb on - strandat 1877.037 kb on - strandat 1877.037 kb on - strandat 1877.044 kb on + strandat 1877.045 kb on - strandat 1877.062 kb on + strandat 1877.063 kb on - strandat 1877.063 kb on - strandat 1877.065 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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1,876,389 - +1.0
1,876,390 + +0.0
1,876,547 - gmhB OKFHMN_10045 0.16 -0.0
1,876,610 - gmhB OKFHMN_10045 0.27 +1.0
1,876,634 - gmhB OKFHMN_10045 0.31 -0.8
1,876,635 + gmhB OKFHMN_10045 0.31 -0.3
1,876,635 + gmhB OKFHMN_10045 0.31 +0.4
1,876,655 - gmhB OKFHMN_10045 0.35 -0.6
1,876,761 + gmhB OKFHMN_10045 0.53 +0.4
1,876,761 + gmhB OKFHMN_10045 0.53 +2.0
1,876,761 + gmhB OKFHMN_10045 0.53 -1.6
1,876,762 - gmhB OKFHMN_10045 0.53 +1.0
1,876,766 - gmhB OKFHMN_10045 0.54 +2.0
1,876,936 + gmhB OKFHMN_10045 0.84 -1.8
1,876,937 - gmhB OKFHMN_10045 0.84 -0.6
1,876,965 + gmhB OKFHMN_10045 0.89 +0.7
1,876,966 - gmhB OKFHMN_10045 0.89 -1.2
1,877,034 + -1.6
1,877,035 - -2.0
1,877,035 - -0.8
1,877,037 - +2.7
1,877,037 - -1.8
1,877,044 + +1.0
1,877,045 - +0.7
1,877,062 + -0.3
1,877,063 - +0.8
1,877,063 - -0.1
1,877,065 + -0.3

Or see this region's nucleotide sequence