Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_09465 and OKFHMN_09470 are separated by 141 nucleotides OKFHMN_09470 and OKFHMN_09475 overlap by 1 nucleotides OKFHMN_09475 and OKFHMN_09480 overlap by 1 nucleotides OKFHMN_09480 and OKFHMN_09485 overlap by 17 nucleotides OKFHMN_09485 and OKFHMN_09490 are separated by 8 nucleotides OKFHMN_09490 and OKFHMN_09495 overlap by 4 nucleotides
OKFHMN_09465: OKFHMN_09465 - phage tail tape measure protein, at 1,773,426 to 1,775,261
_09465
OKFHMN_09470: OKFHMN_09470 - Phage Mu small tail protein, at 1,775,403 to 1,775,672
_09470
OKFHMN_09475: OKFHMN_09475 - phage tail protein, at 1,775,672 to 1,776,028
_09475
OKFHMN_09480: OKFHMN_09480 - phage tail protein, at 1,776,028 to 1,777,524
_09480
OKFHMN_09485: OKFHMN_09485 - DUF2635 domain-containing protein, at 1,777,508 to 1,777,678
_09485
OKFHMN_09490: OKFHMN_09490 - Putative bacteriophage protein, at 1,777,687 to 1,778,247
_09490
OKFHMN_09495: OKFHMN_09495 - Prophage protein, at 1,778,244 to 1,778,750
_09495
Position (kb)
1776
1777
1778 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1775.350 kb on - strand at 1775.510 kb on - strand, within OKFHMN_09470 at 1775.643 kb on - strand, within OKFHMN_09470 at 1775.679 kb on + strand at 1775.732 kb on - strand, within OKFHMN_09475 at 1775.768 kb on + strand, within OKFHMN_09475 at 1775.768 kb on + strand, within OKFHMN_09475 at 1775.772 kb on + strand, within OKFHMN_09475 at 1775.874 kb on + strand, within OKFHMN_09475 at 1776.098 kb on + strand at 1776.098 kb on + strand at 1776.098 kb on + strand at 1776.098 kb on + strand at 1776.099 kb on - strand at 1776.312 kb on - strand, within OKFHMN_09480 at 1776.322 kb on - strand, within OKFHMN_09480 at 1776.322 kb on - strand, within OKFHMN_09480 at 1776.346 kb on + strand, within OKFHMN_09480 at 1776.347 kb on - strand, within OKFHMN_09480 at 1776.351 kb on - strand, within OKFHMN_09480 at 1776.351 kb on - strand, within OKFHMN_09480 at 1776.419 kb on + strand, within OKFHMN_09480 at 1776.419 kb on + strand, within OKFHMN_09480 at 1776.420 kb on - strand, within OKFHMN_09480 at 1776.445 kb on + strand, within OKFHMN_09480 at 1776.446 kb on - strand, within OKFHMN_09480 at 1776.446 kb on - strand, within OKFHMN_09480 at 1776.464 kb on + strand, within OKFHMN_09480 at 1776.543 kb on + strand, within OKFHMN_09480 at 1776.544 kb on - strand, within OKFHMN_09480 at 1776.738 kb on + strand, within OKFHMN_09480 at 1776.752 kb on + strand, within OKFHMN_09480 at 1776.752 kb on + strand, within OKFHMN_09480 at 1776.752 kb on + strand, within OKFHMN_09480 at 1776.753 kb on - strand, within OKFHMN_09480 at 1776.846 kb on + strand, within OKFHMN_09480 at 1776.849 kb on - strand, within OKFHMN_09480 at 1776.974 kb on + strand, within OKFHMN_09480 at 1776.978 kb on - strand, within OKFHMN_09480 at 1776.978 kb on - strand, within OKFHMN_09480 at 1777.017 kb on + strand, within OKFHMN_09480 at 1777.018 kb on - strand, within OKFHMN_09480 at 1777.018 kb on - strand, within OKFHMN_09480 at 1777.166 kb on - strand, within OKFHMN_09480 at 1777.169 kb on + strand, within OKFHMN_09480 at 1777.170 kb on - strand, within OKFHMN_09480 at 1777.170 kb on - strand, within OKFHMN_09480 at 1777.218 kb on + strand, within OKFHMN_09480 at 1777.219 kb on - strand, within OKFHMN_09480 at 1777.262 kb on + strand, within OKFHMN_09480 at 1777.263 kb on - strand, within OKFHMN_09480 at 1777.346 kb on + strand, within OKFHMN_09480 at 1777.367 kb on - strand, within OKFHMN_09480 at 1777.443 kb on + strand at 1777.509 kb on + strand at 1777.585 kb on - strand, within OKFHMN_09485 at 1777.585 kb on - strand, within OKFHMN_09485 at 1777.660 kb on + strand, within OKFHMN_09485 at 1777.907 kb on + strand, within OKFHMN_09490 at 1777.908 kb on - strand, within OKFHMN_09490 at 1777.956 kb on + strand, within OKFHMN_09490 at 1777.957 kb on - strand, within OKFHMN_09490 at 1777.991 kb on + strand, within OKFHMN_09490 at 1777.992 kb on - strand, within OKFHMN_09490 at 1778.033 kb on - strand, within OKFHMN_09490 at 1778.124 kb on - strand, within OKFHMN_09490 at 1778.124 kb on - strand, within OKFHMN_09490 at 1778.276 kb on + strand at 1778.400 kb on - strand, within OKFHMN_09495 at 1778.495 kb on + strand, within OKFHMN_09495
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 1,775,350 - +0.4 1,775,510 - OKFHMN_09470 0.40 +0.1 1,775,643 - OKFHMN_09470 0.89 +1.0 1,775,679 + -0.6 1,775,732 - OKFHMN_09475 0.17 +0.6 1,775,768 + OKFHMN_09475 0.27 -0.3 1,775,768 + OKFHMN_09475 0.27 +0.0 1,775,772 + OKFHMN_09475 0.28 -0.2 1,775,874 + OKFHMN_09475 0.57 -0.7 1,776,098 + -0.4 1,776,098 + +0.1 1,776,098 + -0.1 1,776,098 + -0.5 1,776,099 - +0.1 1,776,312 - OKFHMN_09480 0.19 +0.6 1,776,322 - OKFHMN_09480 0.20 -0.3 1,776,322 - OKFHMN_09480 0.20 -0.4 1,776,346 + OKFHMN_09480 0.21 +1.6 1,776,347 - OKFHMN_09480 0.21 +2.0 1,776,351 - OKFHMN_09480 0.22 -0.8 1,776,351 - OKFHMN_09480 0.22 -1.4 1,776,419 + OKFHMN_09480 0.26 +0.5 1,776,419 + OKFHMN_09480 0.26 +0.3 1,776,420 - OKFHMN_09480 0.26 -0.1 1,776,445 + OKFHMN_09480 0.28 -0.5 1,776,446 - OKFHMN_09480 0.28 +0.0 1,776,446 - OKFHMN_09480 0.28 -0.7 1,776,464 + OKFHMN_09480 0.29 -1.2 1,776,543 + OKFHMN_09480 0.34 +1.0 1,776,544 - OKFHMN_09480 0.34 +3.5 1,776,738 + OKFHMN_09480 0.47 +0.7 1,776,752 + OKFHMN_09480 0.48 +0.1 1,776,752 + OKFHMN_09480 0.48 +1.5 1,776,752 + OKFHMN_09480 0.48 -0.3 1,776,753 - OKFHMN_09480 0.48 +0.5 1,776,846 + OKFHMN_09480 0.55 -0.4 1,776,849 - OKFHMN_09480 0.55 +0.1 1,776,974 + OKFHMN_09480 0.63 -0.4 1,776,978 - OKFHMN_09480 0.63 +2.0 1,776,978 - OKFHMN_09480 0.63 +0.2 1,777,017 + OKFHMN_09480 0.66 +0.6 1,777,018 - OKFHMN_09480 0.66 +1.5 1,777,018 - OKFHMN_09480 0.66 -0.4 1,777,166 - OKFHMN_09480 0.76 +0.4 1,777,169 + OKFHMN_09480 0.76 +3.0 1,777,170 - OKFHMN_09480 0.76 -0.4 1,777,170 - OKFHMN_09480 0.76 +0.0 1,777,218 + OKFHMN_09480 0.79 -0.5 1,777,219 - OKFHMN_09480 0.80 +0.0 1,777,262 + OKFHMN_09480 0.82 +0.4 1,777,263 - OKFHMN_09480 0.82 +0.3 1,777,346 + OKFHMN_09480 0.88 -0.4 1,777,367 - OKFHMN_09480 0.89 -0.3 1,777,443 + +0.8 1,777,509 + -0.6 1,777,585 - OKFHMN_09485 0.45 -0.3 1,777,585 - OKFHMN_09485 0.45 +0.9 1,777,660 + OKFHMN_09485 0.89 -0.4 1,777,907 + OKFHMN_09490 0.39 +0.3 1,777,908 - OKFHMN_09490 0.39 -0.6 1,777,956 + OKFHMN_09490 0.48 -0.3 1,777,957 - OKFHMN_09490 0.48 -0.3 1,777,991 + OKFHMN_09490 0.54 -1.6 1,777,992 - OKFHMN_09490 0.54 -0.2 1,778,033 - OKFHMN_09490 0.62 -0.4 1,778,124 - OKFHMN_09490 0.78 -0.0 1,778,124 - OKFHMN_09490 0.78 -1.3 1,778,276 + +0.8 1,778,400 - OKFHMN_09495 0.31 +0.1 1,778,495 + OKFHMN_09495 0.50 -0.0
Or see this region's nucleotide sequence