Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykgK,ecpR and ecpA are separated by 74 nucleotides ecpA and ecpB are separated by 57 nucleotides ecpB and ecpC are separated by 25 nucleotides
OKFHMN_09205: ykgK,ecpR - regulator protein EcpR, at 1,729,307 to 1,729,849
ykgK,ecpR
OKFHMN_09210: ecpA - common pilus major fimbrillin subunit EcpA, at 1,729,924 to 1,730,511
ecpA
OKFHMN_09215: ecpB - fimbrial chaperone EcpB, at 1,730,569 to 1,731,237
ecpB
OKFHMN_09220: ecpC - fimbrial usher EcpC, at 1,731,263 to 1,733,788
ecpC
Position (kb) 1730
1731
1732 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1729.578 kb on - strand, within ykgK,ecpR at 1729.776 kb on + strand, within ykgK,ecpR at 1729.787 kb on + strand, within ykgK,ecpR at 1729.790 kb on - strand, within ykgK,ecpR at 1729.920 kb on + strand at 1729.920 kb on + strand at 1729.947 kb on - strand at 1729.997 kb on + strand, within ecpA at 1729.998 kb on - strand, within ecpA at 1730.176 kb on - strand, within ecpA at 1730.254 kb on + strand, within ecpA at 1730.255 kb on - strand, within ecpA at 1730.255 kb on - strand, within ecpA at 1730.350 kb on + strand, within ecpA at 1730.483 kb on + strand at 1730.643 kb on + strand, within ecpB at 1730.643 kb on + strand, within ecpB at 1730.643 kb on + strand, within ecpB at 1730.643 kb on + strand, within ecpB at 1730.645 kb on + strand, within ecpB at 1730.645 kb on + strand, within ecpB at 1730.646 kb on - strand, within ecpB at 1730.646 kb on - strand, within ecpB at 1730.857 kb on + strand, within ecpB at 1730.857 kb on + strand, within ecpB at 1730.858 kb on - strand, within ecpB at 1730.858 kb on - strand, within ecpB at 1730.891 kb on - strand, within ecpB at 1731.017 kb on - strand, within ecpB at 1731.052 kb on - strand, within ecpB at 1731.120 kb on + strand, within ecpB at 1731.130 kb on + strand, within ecpB at 1731.216 kb on + strand at 1731.217 kb on - strand at 1731.239 kb on + strand at 1731.240 kb on - strand at 1731.240 kb on - strand at 1731.357 kb on + strand at 1731.357 kb on + strand at 1731.357 kb on + strand at 1731.386 kb on - strand at 1731.437 kb on + strand at 1731.439 kb on + strand at 1731.439 kb on + strand at 1731.519 kb on + strand, within ecpC at 1731.720 kb on + strand, within ecpC at 1731.720 kb on + strand, within ecpC at 1731.723 kb on + strand, within ecpC at 1731.723 kb on + strand, within ecpC at 1731.724 kb on - strand, within ecpC at 1731.786 kb on - strand, within ecpC at 1731.800 kb on + strand, within ecpC at 1731.800 kb on + strand, within ecpC at 1731.800 kb on + strand, within ecpC at 1731.800 kb on + strand, within ecpC at 1731.800 kb on + strand, within ecpC at 1731.939 kb on + strand, within ecpC at 1731.941 kb on + strand, within ecpC at 1731.942 kb on - strand, within ecpC at 1731.943 kb on + strand, within ecpC at 1731.944 kb on - strand, within ecpC at 1731.953 kb on + strand, within ecpC at 1732.152 kb on + strand, within ecpC at 1732.152 kb on + strand, within ecpC at 1732.153 kb on - strand, within ecpC at 1732.153 kb on - strand, within ecpC at 1732.153 kb on - strand, within ecpC at 1732.180 kb on - strand, within ecpC at 1732.180 kb on - strand, within ecpC
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 1,729,578 - ykgK,ecpR OKFHMN_09205 0.50 -0.4 1,729,776 + ykgK,ecpR OKFHMN_09205 0.86 -0.4 1,729,787 + ykgK,ecpR OKFHMN_09205 0.88 +1.9 1,729,790 - ykgK,ecpR OKFHMN_09205 0.89 -0.3 1,729,920 + -0.2 1,729,920 + -0.9 1,729,947 - +0.7 1,729,997 + ecpA OKFHMN_09210 0.12 -0.4 1,729,998 - ecpA OKFHMN_09210 0.13 +2.4 1,730,176 - ecpA OKFHMN_09210 0.43 -1.9 1,730,254 + ecpA OKFHMN_09210 0.56 +0.3 1,730,255 - ecpA OKFHMN_09210 0.56 +0.3 1,730,255 - ecpA OKFHMN_09210 0.56 -1.1 1,730,350 + ecpA OKFHMN_09210 0.72 +0.2 1,730,483 + +0.4 1,730,643 + ecpB OKFHMN_09215 0.11 +0.2 1,730,643 + ecpB OKFHMN_09215 0.11 -0.6 1,730,643 + ecpB OKFHMN_09215 0.11 -0.8 1,730,643 + ecpB OKFHMN_09215 0.11 -0.2 1,730,645 + ecpB OKFHMN_09215 0.11 -0.2 1,730,645 + ecpB OKFHMN_09215 0.11 +2.7 1,730,646 - ecpB OKFHMN_09215 0.12 +0.8 1,730,646 - ecpB OKFHMN_09215 0.12 +0.6 1,730,857 + ecpB OKFHMN_09215 0.43 +0.1 1,730,857 + ecpB OKFHMN_09215 0.43 -0.3 1,730,858 - ecpB OKFHMN_09215 0.43 -1.1 1,730,858 - ecpB OKFHMN_09215 0.43 +0.1 1,730,891 - ecpB OKFHMN_09215 0.48 +0.4 1,731,017 - ecpB OKFHMN_09215 0.67 +0.1 1,731,052 - ecpB OKFHMN_09215 0.72 -0.2 1,731,120 + ecpB OKFHMN_09215 0.82 -0.4 1,731,130 + ecpB OKFHMN_09215 0.84 +0.9 1,731,216 + -0.1 1,731,217 - -0.5 1,731,239 + -0.1 1,731,240 - +0.1 1,731,240 - +0.4 1,731,357 + +0.0 1,731,357 + -0.6 1,731,357 + +0.7 1,731,386 - +0.9 1,731,437 + -0.9 1,731,439 + +0.2 1,731,439 + +0.2 1,731,519 + ecpC OKFHMN_09220 0.10 +0.3 1,731,720 + ecpC OKFHMN_09220 0.18 -0.5 1,731,720 + ecpC OKFHMN_09220 0.18 +0.5 1,731,723 + ecpC OKFHMN_09220 0.18 -0.2 1,731,723 + ecpC OKFHMN_09220 0.18 +1.5 1,731,724 - ecpC OKFHMN_09220 0.18 -0.5 1,731,786 - ecpC OKFHMN_09220 0.21 +2.2 1,731,800 + ecpC OKFHMN_09220 0.21 +0.7 1,731,800 + ecpC OKFHMN_09220 0.21 +0.2 1,731,800 + ecpC OKFHMN_09220 0.21 -0.4 1,731,800 + ecpC OKFHMN_09220 0.21 -0.7 1,731,800 + ecpC OKFHMN_09220 0.21 -0.7 1,731,939 + ecpC OKFHMN_09220 0.27 +0.4 1,731,941 + ecpC OKFHMN_09220 0.27 +1.7 1,731,942 - ecpC OKFHMN_09220 0.27 +0.4 1,731,943 + ecpC OKFHMN_09220 0.27 -0.6 1,731,944 - ecpC OKFHMN_09220 0.27 +0.7 1,731,953 + ecpC OKFHMN_09220 0.27 -1.0 1,732,152 + ecpC OKFHMN_09220 0.35 -0.5 1,732,152 + ecpC OKFHMN_09220 0.35 -1.6 1,732,153 - ecpC OKFHMN_09220 0.35 +0.2 1,732,153 - ecpC OKFHMN_09220 0.35 -0.3 1,732,153 - ecpC OKFHMN_09220 0.35 -0.4 1,732,180 - ecpC OKFHMN_09220 0.36 -0.3 1,732,180 - ecpC OKFHMN_09220 0.36 -0.1
Or see this region's nucleotide sequence