Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07060

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrhsA and ybfA are separated by 241 nucleotidesybfA and kdpA are separated by 401 nucleotideskdpA and kdpB are separated by 22 nucleotides OKFHMN_07050: rhsA - RHS element protein, at 1,261,095 to 1,265,294 rhsA OKFHMN_07055: ybfA - Uncharacterized protein YbfA, at 1,265,536 to 1,265,742 ybfA OKFHMN_07060: kdpA - potassium-transporting ATPase subunit KdpA, at 1,266,144 to 1,267,817 kdpA OKFHMN_07065: kdpB - potassium-transporting ATPase subunit KdpB, at 1,267,840 to 1,269,888 kdpB Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1265.424 kb on + strandat 1265.425 kb on - strandat 1265.456 kb on + strandat 1265.519 kb on + strandat 1265.520 kb on - strandat 1265.540 kb on + strandat 1265.619 kb on - strand, within ybfAat 1265.691 kb on - strand, within ybfAat 1265.695 kb on - strand, within ybfAat 1265.724 kb on - strandat 1265.724 kb on - strandat 1265.743 kb on - strandat 1265.814 kb on - strandat 1265.877 kb on - strandat 1266.115 kb on + strandat 1266.116 kb on - strandat 1266.190 kb on + strandat 1266.211 kb on + strandat 1266.211 kb on + strandat 1266.212 kb on - strandat 1266.243 kb on - strandat 1266.380 kb on + strand, within kdpAat 1266.399 kb on + strand, within kdpAat 1266.496 kb on - strand, within kdpAat 1267.059 kb on - strand, within kdpAat 1267.109 kb on + strand, within kdpAat 1267.284 kb on + strand, within kdpAat 1267.284 kb on + strand, within kdpAat 1267.376 kb on - strand, within kdpAat 1267.376 kb on - strand, within kdpAat 1267.515 kb on + strand, within kdpAat 1267.821 kb on + strandat 1267.839 kb on + strandat 1267.848 kb on + strandat 1267.986 kb on + strandat 1268.031 kb on + strandat 1268.066 kb on + strand, within kdpBat 1268.067 kb on - strand, within kdpBat 1268.254 kb on - strand, within kdpB

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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1,265,424 + +0.8
1,265,425 - +0.8
1,265,456 + +1.8
1,265,519 + +0.4
1,265,520 - +0.1
1,265,540 + +0.2
1,265,619 - ybfA OKFHMN_07055 0.40 +2.8
1,265,691 - ybfA OKFHMN_07055 0.75 +0.1
1,265,695 - ybfA OKFHMN_07055 0.77 +0.2
1,265,724 - +0.6
1,265,724 - -0.2
1,265,743 - +0.5
1,265,814 - +1.0
1,265,877 - -0.3
1,266,115 + -0.7
1,266,116 - -0.3
1,266,190 + -1.3
1,266,211 + -2.0
1,266,211 + +1.0
1,266,212 - +0.8
1,266,243 - +0.6
1,266,380 + kdpA OKFHMN_07060 0.14 -0.0
1,266,399 + kdpA OKFHMN_07060 0.15 -0.9
1,266,496 - kdpA OKFHMN_07060 0.21 +0.8
1,267,059 - kdpA OKFHMN_07060 0.55 +0.2
1,267,109 + kdpA OKFHMN_07060 0.58 -0.9
1,267,284 + kdpA OKFHMN_07060 0.68 +0.6
1,267,284 + kdpA OKFHMN_07060 0.68 -0.2
1,267,376 - kdpA OKFHMN_07060 0.74 -0.5
1,267,376 - kdpA OKFHMN_07060 0.74 -2.0
1,267,515 + kdpA OKFHMN_07060 0.82 -1.2
1,267,821 + -0.5
1,267,839 + -0.1
1,267,848 + +0.3
1,267,986 + -1.0
1,268,031 + -1.8
1,268,066 + kdpB OKFHMN_07065 0.11 +0.2
1,268,067 - kdpB OKFHMN_07065 0.11 -1.9
1,268,254 - kdpB OKFHMN_07065 0.20 +0.3

Or see this region's nucleotide sequence