Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06850

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcydA and OKFHMN_06850 are separated by 805 nucleotidesOKFHMN_06850 and OKFHMN_06855 are separated by 81 nucleotides OKFHMN_06845: cydA - cytochrome ubiquinol oxidase subunit I, at 1,215,772 to 1,217,340 cydA OKFHMN_06850: OKFHMN_06850 - hypothetical protein, at 1,218,146 to 1,219,090 _06850 OKFHMN_06855: OKFHMN_06855 - hypothetical protein, at 1,219,172 to 1,219,594 _06855 Position (kb) 1218 1219 1220Strain fitness (log2 ratio) -2 -1 0 1 2at 1217.528 kb on - strandat 1217.561 kb on - strandat 1217.598 kb on - strandat 1217.633 kb on - strandat 1217.633 kb on - strandat 1217.848 kb on - strandat 1217.863 kb on + strandat 1217.864 kb on - strandat 1218.005 kb on - strandat 1218.087 kb on + strandat 1218.211 kb on - strandat 1218.320 kb on - strand, within OKFHMN_06850at 1218.455 kb on - strand, within OKFHMN_06850at 1218.492 kb on - strand, within OKFHMN_06850at 1218.808 kb on + strand, within OKFHMN_06850at 1218.839 kb on - strand, within OKFHMN_06850at 1218.860 kb on + strand, within OKFHMN_06850at 1218.861 kb on - strand, within OKFHMN_06850at 1218.951 kb on + strand, within OKFHMN_06850at 1218.951 kb on + strand, within OKFHMN_06850at 1219.066 kb on - strandat 1219.327 kb on - strand, within OKFHMN_06855at 1219.352 kb on + strand, within OKFHMN_06855at 1219.559 kb on - strandat 1219.768 kb on + strandat 1220.034 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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1,217,528 - -1.0
1,217,561 - -1.7
1,217,598 - +1.8
1,217,633 - +0.8
1,217,633 - -0.8
1,217,848 - +0.9
1,217,863 + -0.9
1,217,864 - -1.9
1,218,005 - +0.2
1,218,087 + +0.3
1,218,211 - -0.7
1,218,320 - OKFHMN_06850 0.18 +0.5
1,218,455 - OKFHMN_06850 0.33 -0.8
1,218,492 - OKFHMN_06850 0.37 +1.3
1,218,808 + OKFHMN_06850 0.70 -0.2
1,218,839 - OKFHMN_06850 0.73 -0.1
1,218,860 + OKFHMN_06850 0.76 -0.1
1,218,861 - OKFHMN_06850 0.76 -0.5
1,218,951 + OKFHMN_06850 0.85 -0.5
1,218,951 + OKFHMN_06850 0.85 +0.4
1,219,066 - -0.4
1,219,327 - OKFHMN_06855 0.37 +1.8
1,219,352 + OKFHMN_06855 0.43 -0.4
1,219,559 - -0.3
1,219,768 + +0.1
1,220,034 + +0.6

Or see this region's nucleotide sequence