Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06835

Experiment: EV146

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttolQ and ybgC overlap by 4 nucleotidesybgC and ybgE are separated by 149 nucleotidesybgE and cydX overlap by 1 nucleotidescydX and cydB are separated by 14 nucleotides OKFHMN_06820: tolQ - Tol-Pal system protein TolQ, at 1,212,953 to 1,213,645 tolQ OKFHMN_06825: ybgC - tol-pal system-associated acyl-CoA thioesterase, at 1,213,642 to 1,214,046 ybgC OKFHMN_06830: ybgE - cyd operon protein YbgE, at 1,214,196 to 1,214,489 ybgE OKFHMN_06835: cydX - cytochrome bd-I oxidase subunit CydX, at 1,214,489 to 1,214,602 cydX OKFHMN_06840: cydB - cytochrome d ubiquinol oxidase subunit II, at 1,214,617 to 1,215,756 cydB Position (kb) 1214 1215Strain fitness (log2 ratio) -1 0 1at 1213.743 kb on + strand, within ybgCat 1213.761 kb on + strand, within ybgCat 1213.762 kb on - strand, within ybgCat 1213.824 kb on + strand, within ybgCat 1213.848 kb on - strand, within ybgCat 1213.964 kb on + strand, within ybgCat 1213.965 kb on - strand, within ybgCat 1213.977 kb on - strand, within ybgCat 1214.006 kb on + strandat 1214.007 kb on - strandat 1214.007 kb on - strandat 1214.007 kb on - strandat 1214.009 kb on + strandat 1214.010 kb on - strandat 1214.010 kb on - strandat 1214.041 kb on - strandat 1214.041 kb on - strandat 1214.050 kb on - strandat 1214.084 kb on - strandat 1214.094 kb on - strandat 1214.134 kb on + strandat 1214.396 kb on + strand, within ybgEat 1214.397 kb on - strand, within ybgEat 1214.397 kb on - strand, within ybgEat 1214.483 kb on + strandat 1214.615 kb on - strandat 1214.615 kb on - strandat 1214.619 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV146
remove
1,213,743 + ybgC OKFHMN_06825 0.25 -0.8
1,213,761 + ybgC OKFHMN_06825 0.29 -0.8
1,213,762 - ybgC OKFHMN_06825 0.30 -0.1
1,213,824 + ybgC OKFHMN_06825 0.45 +0.8
1,213,848 - ybgC OKFHMN_06825 0.51 -0.5
1,213,964 + ybgC OKFHMN_06825 0.80 -0.5
1,213,965 - ybgC OKFHMN_06825 0.80 +0.4
1,213,977 - ybgC OKFHMN_06825 0.83 +0.8
1,214,006 + -0.2
1,214,007 - +0.3
1,214,007 - -0.8
1,214,007 - -0.4
1,214,009 + -1.5
1,214,010 - -0.8
1,214,010 - -0.0
1,214,041 - +0.8
1,214,041 - -0.1
1,214,050 - -0.1
1,214,084 - +0.3
1,214,094 - -0.5
1,214,134 + -0.2
1,214,396 + ybgE OKFHMN_06830 0.68 -1.7
1,214,397 - ybgE OKFHMN_06830 0.68 +0.3
1,214,397 - ybgE OKFHMN_06830 0.68 -1.5
1,214,483 + +0.6
1,214,615 - +0.9
1,214,615 - +0.8
1,214,619 - +0.6

Or see this region's nucleotide sequence