Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_05730 and OKFHMN_05735 are separated by 15 nucleotides OKFHMN_05735 and OKFHMN_05740 are separated by 9 nucleotides
OKFHMN_05730: OKFHMN_05730 - Hemagglutinin repeat-containing protein, at 986,834 to 995,899
_05730
OKFHMN_05735: OKFHMN_05735 - toxin-activating lysine-acyltransferase, at 995,915 to 996,442
_05735
OKFHMN_05740: OKFHMN_05740 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 996,452 to 998,104
_05740
Position (kb) 996
997
998
999 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 995.574 kb on + strand at 995.575 kb on - strand at 995.575 kb on - strand at 995.578 kb on + strand at 995.578 kb on + strand at 995.578 kb on + strand at 995.579 kb on - strand at 995.581 kb on + strand at 995.582 kb on - strand at 995.767 kb on + strand at 995.917 kb on - strand at 996.037 kb on - strand, within OKFHMN_05735 at 996.188 kb on - strand, within OKFHMN_05735 at 996.193 kb on - strand, within OKFHMN_05735 at 996.271 kb on - strand, within OKFHMN_05735 at 996.271 kb on - strand, within OKFHMN_05735 at 996.271 kb on - strand, within OKFHMN_05735 at 996.405 kb on + strand at 996.406 kb on - strand at 996.426 kb on + strand at 996.427 kb on - strand at 996.656 kb on + strand, within OKFHMN_05740 at 996.657 kb on - strand, within OKFHMN_05740 at 996.705 kb on + strand, within OKFHMN_05740 at 996.706 kb on - strand, within OKFHMN_05740 at 996.706 kb on - strand, within OKFHMN_05740 at 996.803 kb on - strand, within OKFHMN_05740 at 996.898 kb on + strand, within OKFHMN_05740 at 997.079 kb on - strand, within OKFHMN_05740 at 997.083 kb on + strand, within OKFHMN_05740 at 997.084 kb on - strand, within OKFHMN_05740 at 997.113 kb on + strand, within OKFHMN_05740 at 997.113 kb on + strand, within OKFHMN_05740 at 997.114 kb on - strand, within OKFHMN_05740 at 997.114 kb on - strand, within OKFHMN_05740 at 997.201 kb on - strand, within OKFHMN_05740 at 997.398 kb on - strand, within OKFHMN_05740 at 997.399 kb on + strand, within OKFHMN_05740 at 997.400 kb on - strand, within OKFHMN_05740 at 997.487 kb on - strand, within OKFHMN_05740 at 997.521 kb on - strand, within OKFHMN_05740 at 997.562 kb on - strand, within OKFHMN_05740 at 997.641 kb on + strand, within OKFHMN_05740 at 997.942 kb on + strand at 998.205 kb on + strand at 998.326 kb on - strand at 998.527 kb on - strand at 998.746 kb on + strand at 998.874 kb on - strand at 998.882 kb on - strand at 998.883 kb on + strand at 998.883 kb on + strand at 998.909 kb on + strand at 998.909 kb on + strand at 998.910 kb on - strand at 998.910 kb on - strand at 998.939 kb on + strand at 998.939 kb on + strand at 998.940 kb on - strand at 998.940 kb on - strand at 998.945 kb on - strand at 998.981 kb on + strand at 998.993 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 995,574 + +1.2 995,575 - +1.9 995,575 - -0.4 995,578 + -1.2 995,578 + +0.4 995,578 + -0.8 995,579 - +0.2 995,581 + -0.2 995,582 - -0.0 995,767 + +1.8 995,917 - +0.0 996,037 - OKFHMN_05735 0.23 +0.6 996,188 - OKFHMN_05735 0.52 +1.1 996,193 - OKFHMN_05735 0.53 +0.5 996,271 - OKFHMN_05735 0.67 +0.2 996,271 - OKFHMN_05735 0.67 -1.4 996,271 - OKFHMN_05735 0.67 +0.4 996,405 + +1.1 996,406 - +0.8 996,426 + +1.0 996,427 - -1.0 996,656 + OKFHMN_05740 0.12 +0.5 996,657 - OKFHMN_05740 0.12 -0.2 996,705 + OKFHMN_05740 0.15 +0.1 996,706 - OKFHMN_05740 0.15 -0.2 996,706 - OKFHMN_05740 0.15 +0.1 996,803 - OKFHMN_05740 0.21 +2.8 996,898 + OKFHMN_05740 0.27 +0.8 997,079 - OKFHMN_05740 0.38 -0.1 997,083 + OKFHMN_05740 0.38 -0.8 997,084 - OKFHMN_05740 0.38 -0.1 997,113 + OKFHMN_05740 0.40 +0.1 997,113 + OKFHMN_05740 0.40 +0.8 997,114 - OKFHMN_05740 0.40 +0.5 997,114 - OKFHMN_05740 0.40 +0.8 997,201 - OKFHMN_05740 0.45 +0.1 997,398 - OKFHMN_05740 0.57 -0.0 997,399 + OKFHMN_05740 0.57 -1.0 997,400 - OKFHMN_05740 0.57 -0.2 997,487 - OKFHMN_05740 0.63 +0.2 997,521 - OKFHMN_05740 0.65 +0.7 997,562 - OKFHMN_05740 0.67 +0.4 997,641 + OKFHMN_05740 0.72 +0.5 997,942 + +3.4 998,205 + +0.2 998,326 - +0.0 998,527 - +0.0 998,746 + -1.8 998,874 - +0.2 998,882 - +0.1 998,883 + -0.1 998,883 + -0.2 998,909 + +0.2 998,909 + +0.4 998,910 - +0.9 998,910 - +0.4 998,939 + +0.2 998,939 + +0.5 998,940 - -0.2 998,940 - -0.1 998,945 - -1.0 998,981 + -0.3 998,993 + +0.4
Or see this region's nucleotide sequence