Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05630

Experiment: EV146

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_05615 and OKFHMN_05620 overlap by 4 nucleotidesOKFHMN_05620 and OKFHMN_05625 are separated by 46 nucleotidesOKFHMN_05625 and OKFHMN_05630 are separated by 49 nucleotidesOKFHMN_05630 and OKFHMN_05635 overlap by 1 nucleotidesOKFHMN_05635 and yeeS are separated by 68 nucleotidesyeeS and OKFHMN_05645 are separated by 15 nucleotides OKFHMN_05615: OKFHMN_05615 - hypothetical protein, at 960,493 to 960,981 _05615 OKFHMN_05620: OKFHMN_05620 - toxin, at 960,978 to 961,355 _05620 OKFHMN_05625: OKFHMN_05625 - antitoxin, at 961,402 to 961,776 _05625 OKFHMN_05630: OKFHMN_05630 - Phage-related protein, at 961,826 to 961,939 _05630 OKFHMN_05635: OKFHMN_05635 - DUF987 domain-containing protein, at 961,939 to 962,160 _05635 OKFHMN_05640: yeeS - UPF0758 protein YeeS, at 962,229 to 962,705 yeeS OKFHMN_05645: OKFHMN_05645 - restriction endonuclease, at 962,721 to 963,206 _05645 Position (kb) 961 962Strain fitness (log2 ratio) -1 0 1 2at 961.148 kb on - strand, within OKFHMN_05620at 961.860 kb on + strand, within OKFHMN_05630at 961.860 kb on + strand, within OKFHMN_05630at 961.860 kb on + strand, within OKFHMN_05630at 961.860 kb on + strand, within OKFHMN_05630at 962.080 kb on - strand, within OKFHMN_05635at 962.168 kb on + strandat 962.187 kb on + strandat 962.187 kb on + strandat 962.337 kb on - strand, within yeeSat 962.806 kb on + strand, within OKFHMN_05645

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV146
remove
961,148 - OKFHMN_05620 0.45 -0.5
961,860 + OKFHMN_05630 0.30 -0.8
961,860 + OKFHMN_05630 0.30 -0.3
961,860 + OKFHMN_05630 0.30 -0.5
961,860 + OKFHMN_05630 0.30 +0.8
962,080 - OKFHMN_05635 0.64 -1.6
962,168 + +0.2
962,187 + -0.8
962,187 + +0.6
962,337 - yeeS OKFHMN_05640 0.23 -1.4
962,806 + OKFHMN_05645 0.17 +2.3

Or see this region's nucleotide sequence