Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_04965 and OKFHMN_04970 are separated by 159 nucleotides OKFHMN_04970 and OKFHMN_04975 are separated by 220 nucleotides OKFHMN_04975 and OKFHMN_04980 overlap by 56 nucleotides OKFHMN_04980 and OKFHMN_04985 are separated by 465 nucleotides OKFHMN_04985 and tra5 are separated by 204 nucleotides
OKFHMN_04965: OKFHMN_04965 - hypothetical protein, at 830,256 to 830,528
_04965
OKFHMN_04970: OKFHMN_04970 - lysozyme, at 830,688 to 831,221
_04970
OKFHMN_04975: OKFHMN_04975 - hypothetical protein, at 831,442 to 831,555
_04975
OKFHMN_04980: OKFHMN_04980 - lysis protein, at 831,500 to 832,024
_04980
OKFHMN_04985: OKFHMN_04985 - PerC family transcriptional regulator, at 832,490 to 832,804
_04985
OKFHMN_04990: tra5 - IS3 family transposase, at 833,009 to 833,659
tra5
Position (kb) 831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2 at 830.530 kb on - strand at 830.572 kb on + strand at 830.572 kb on + strand at 830.573 kb on - strand at 830.653 kb on + strand at 830.877 kb on - strand, within OKFHMN_04970 at 831.219 kb on + strand at 831.220 kb on - strand at 831.441 kb on + strand at 831.442 kb on - strand at 831.510 kb on + strand at 831.511 kb on - strand at 832.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 830,530 - -1.9 830,572 + +0.2 830,572 + -1.6 830,573 - +1.8 830,653 + -0.7 830,877 - OKFHMN_04970 0.35 -1.0 831,219 + +0.5 831,220 - -0.6 831,441 + -0.2 831,442 - +0.3 831,510 + +0.8 831,511 - +1.8 832,475 - +0.6
Or see this region's nucleotide sequence