Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04745

Experiment: EV146

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_04735 and gfcB are separated by 106 nucleotidesgfcB and gfcC overlap by 4 nucleotidesgfcC and gfcD overlap by 1 nucleotides OKFHMN_04735: OKFHMN_04735 - Threonine-rich inner membrane protein GfcA, at 787,151 to 787,456 _04735 OKFHMN_04740: gfcB - Uncharacterized lipoprotein GfcB, at 787,563 to 788,207 gfcB OKFHMN_04745: gfcC - Uncharacterized protein GfcC, at 788,204 to 788,950 gfcC OKFHMN_04750: gfcD - Uncharacterized lipoprotein GfcD, at 788,950 to 791,046 gfcD Position (kb) 788 789Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 787.252 kb on + strand, within OKFHMN_04735at 787.255 kb on + strand, within OKFHMN_04735at 787.300 kb on + strand, within OKFHMN_04735at 787.386 kb on + strand, within OKFHMN_04735at 787.505 kb on + strandat 787.768 kb on + strand, within gfcBat 788.048 kb on + strand, within gfcBat 788.168 kb on + strandat 788.209 kb on + strandat 788.214 kb on + strandat 788.222 kb on + strandat 788.539 kb on + strand, within gfcCat 788.620 kb on + strand, within gfcCat 788.634 kb on + strand, within gfcCat 788.650 kb on + strand, within gfcCat 788.776 kb on + strand, within gfcCat 788.880 kb on + strandat 788.881 kb on - strandat 789.018 kb on - strandat 789.222 kb on + strand, within gfcDat 789.223 kb on - strand, within gfcDat 789.226 kb on + strand, within gfcDat 789.486 kb on + strand, within gfcDat 789.892 kb on + strand, within gfcDat 789.943 kb on + strand, within gfcDat 789.945 kb on + strand, within gfcD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV146
remove
787,252 + OKFHMN_04735 0.33 -1.5
787,255 + OKFHMN_04735 0.34 -2.4
787,300 + OKFHMN_04735 0.49 -1.9
787,386 + OKFHMN_04735 0.77 -1.7
787,505 + -1.9
787,768 + gfcB OKFHMN_04740 0.32 +0.2
788,048 + gfcB OKFHMN_04740 0.75 -2.8
788,168 + -2.7
788,209 + -2.0
788,214 + -2.5
788,222 + -2.3
788,539 + gfcC OKFHMN_04745 0.45 -1.4
788,620 + gfcC OKFHMN_04745 0.56 -1.5
788,634 + gfcC OKFHMN_04745 0.58 -2.2
788,650 + gfcC OKFHMN_04745 0.60 -3.4
788,776 + gfcC OKFHMN_04745 0.77 -0.8
788,880 + -4.6
788,881 - -1.5
789,018 - -2.0
789,222 + gfcD OKFHMN_04750 0.13 -1.8
789,223 - gfcD OKFHMN_04750 0.13 +1.7
789,226 + gfcD OKFHMN_04750 0.13 -1.7
789,486 + gfcD OKFHMN_04750 0.26 -0.8
789,892 + gfcD OKFHMN_04750 0.45 -1.1
789,943 + gfcD OKFHMN_04750 0.47 -0.8
789,945 + gfcD OKFHMN_04750 0.47 -2.7

Or see this region's nucleotide sequence