Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cspG and OKFHMN_04735 are separated by 939 nucleotides OKFHMN_04735 and gfcB are separated by 106 nucleotides gfcB and gfcC overlap by 4 nucleotides
OKFHMN_04730: cspG - cold shock protein CspG, at 785,999 to 786,211
cspG
OKFHMN_04735: OKFHMN_04735 - Threonine-rich inner membrane protein GfcA, at 787,151 to 787,456
_04735
OKFHMN_04740: gfcB - Uncharacterized lipoprotein GfcB, at 787,563 to 788,207
gfcB
OKFHMN_04745: gfcC - Uncharacterized protein GfcC, at 788,204 to 788,950
gfcC
Position (kb) 787
788 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 786.271 kb on - strand at 786.271 kb on - strand at 786.337 kb on - strand at 786.633 kb on + strand at 786.727 kb on - strand at 786.836 kb on - strand at 786.855 kb on + strand at 786.898 kb on + strand at 786.990 kb on + strand at 787.041 kb on + strand at 787.094 kb on + strand at 787.094 kb on + strand at 787.116 kb on + strand at 787.120 kb on + strand at 787.252 kb on + strand, within OKFHMN_04735 at 787.255 kb on + strand, within OKFHMN_04735 at 787.300 kb on + strand, within OKFHMN_04735 at 787.386 kb on + strand, within OKFHMN_04735 at 787.505 kb on + strand at 787.768 kb on + strand, within gfcB at 788.048 kb on + strand, within gfcB at 788.168 kb on + strand at 788.209 kb on + strand at 788.214 kb on + strand at 788.222 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 786,271 - +0.4 786,271 - -1.8 786,337 - +0.7 786,633 + +0.7 786,727 - +0.6 786,836 - -0.2 786,855 + -0.3 786,898 + +0.2 786,990 + -2.1 787,041 + -1.3 787,094 + -1.9 787,094 + -4.4 787,116 + -2.4 787,120 + -1.1 787,252 + OKFHMN_04735 0.33 -1.5 787,255 + OKFHMN_04735 0.34 -2.4 787,300 + OKFHMN_04735 0.49 -1.9 787,386 + OKFHMN_04735 0.77 -1.7 787,505 + -1.9 787,768 + gfcB OKFHMN_04740 0.32 +0.2 788,048 + gfcB OKFHMN_04740 0.75 -2.8 788,168 + -2.7 788,209 + -2.0 788,214 + -2.5 788,222 + -2.3
Or see this region's nucleotide sequence