Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04515

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_04505 and fimC overlap by 4 nucleotidesfimC and fabG are separated by 145 nucleotidesfabG and cadC1 are separated by 687 nucleotides OKFHMN_04505: OKFHMN_04505 - adhesin, at 734,795 to 736,129 _04505 OKFHMN_04510: fimC - P pilus assembly protein, chaperone PapD, at 736,126 to 736,815 fimC OKFHMN_04515: fabG - oxidoreductase, at 736,961 to 737,743 fabG OKFHMN_04520: cadC1 - transcriptional regulator, at 738,431 to 739,243 cadC1 Position (kb) 736 737 738Strain fitness (log2 ratio) -1 0 1at 736.034 kb on + strandat 736.108 kb on + strandat 736.111 kb on - strandat 736.603 kb on - strand, within fimCat 736.603 kb on - strand, within fimCat 736.607 kb on - strand, within fimCat 736.609 kb on - strand, within fimCat 736.991 kb on + strandat 737.086 kb on + strand, within fabGat 738.001 kb on + strandat 738.072 kb on - strandat 738.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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736,034 + -0.7
736,108 + -0.8
736,111 - -1.2
736,603 - fimC OKFHMN_04510 0.69 +0.5
736,603 - fimC OKFHMN_04510 0.69 +0.0
736,607 - fimC OKFHMN_04510 0.70 +0.2
736,609 - fimC OKFHMN_04510 0.70 -0.2
736,991 + +0.7
737,086 + fabG OKFHMN_04515 0.16 +0.2
738,001 + +0.8
738,072 - -1.5
738,151 + -0.0

Or see this region's nucleotide sequence