Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04015

Experiment: EV146

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfhaC and tnp-IS3 are separated by 180 nucleotidestnp-IS3 and OKFHMN_04020 overlap by 1 nucleotides OKFHMN_04010: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 641,728 to 642,774 fhaC OKFHMN_04015: tnp-IS3 - IS3 family transposase, at 642,955 to 643,281 tnp-IS3 OKFHMN_04020: OKFHMN_04020 - IS3 family transposase, at 643,281 to 644,168 _04020 Position (kb) 642 643 644Strain fitness (log2 ratio) -1 0 1 2at 642.205 kb on - strand, within fhaCat 642.206 kb on - strand, within fhaCat 642.229 kb on - strand, within fhaCat 642.233 kb on - strand, within fhaCat 642.309 kb on + strand, within fhaCat 642.928 kb on - strandat 644.227 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV146
remove
642,205 - fhaC OKFHMN_04010 0.46 +1.9
642,206 - fhaC OKFHMN_04010 0.46 -0.8
642,229 - fhaC OKFHMN_04010 0.48 -0.5
642,233 - fhaC OKFHMN_04010 0.48 +1.7
642,309 + fhaC OKFHMN_04010 0.55 -0.2
642,928 - +0.3
644,227 - -1.1

Or see this region's nucleotide sequence