Experiment: EV146
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yceM and yceH are separated by 1 nucleotides yceH and rimJ are separated by 10 nucleotides rimJ and mdtH are separated by 235 nucleotides
OKFHMN_03700: yceM - Putative oxidoreductase YceM, at 589,234 to 590,157
yceM
OKFHMN_03705: yceH - UPF0502 protein YceH, at 590,159 to 590,806
yceH
OKFHMN_03710: rimJ - ribosomal protein S5-alanine N-acetyltransferase, at 590,817 to 591,401
rimJ
OKFHMN_03715: mdtH - multidrug efflux MFS transporter MdtH, at 591,637 to 592,845
mdtH
Position (kb) 590
591 Strain fitness (log2 ratio) -2
-1
0
1
2 at 589.522 kb on - strand, within yceM at 589.598 kb on - strand, within yceM at 589.598 kb on - strand, within yceM at 589.665 kb on - strand, within yceM at 589.686 kb on - strand, within yceM at 589.686 kb on - strand, within yceM at 589.895 kb on - strand, within yceM at 589.910 kb on - strand, within yceM at 590.126 kb on - strand at 590.161 kb on - strand at 590.487 kb on - strand, within yceH at 590.706 kb on - strand, within yceH at 590.792 kb on - strand at 590.792 kb on - strand at 590.848 kb on - strand at 590.860 kb on - strand at 590.968 kb on + strand, within rimJ at 590.968 kb on + strand, within rimJ at 590.969 kb on - strand, within rimJ at 590.979 kb on - strand, within rimJ at 590.990 kb on + strand, within rimJ at 590.991 kb on - strand, within rimJ at 591.010 kb on + strand, within rimJ at 591.173 kb on - strand, within rimJ at 591.404 kb on + strand at 591.405 kb on - strand at 591.407 kb on - strand at 591.411 kb on - strand at 591.432 kb on - strand at 591.441 kb on + strand at 591.446 kb on - strand at 591.449 kb on - strand at 591.451 kb on + strand at 591.452 kb on - strand at 591.512 kb on - strand at 591.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV146 remove 589,522 - yceM OKFHMN_03700 0.31 -1.2 589,598 - yceM OKFHMN_03700 0.39 -0.6 589,598 - yceM OKFHMN_03700 0.39 +0.4 589,665 - yceM OKFHMN_03700 0.47 -0.3 589,686 - yceM OKFHMN_03700 0.49 -0.2 589,686 - yceM OKFHMN_03700 0.49 -1.1 589,895 - yceM OKFHMN_03700 0.72 +0.9 589,910 - yceM OKFHMN_03700 0.73 -1.1 590,126 - +0.5 590,161 - +1.1 590,487 - yceH OKFHMN_03705 0.51 -0.2 590,706 - yceH OKFHMN_03705 0.84 -1.2 590,792 - +0.7 590,792 - -0.3 590,848 - -0.9 590,860 - +0.7 590,968 + rimJ OKFHMN_03710 0.26 -1.3 590,968 + rimJ OKFHMN_03710 0.26 -0.6 590,969 - rimJ OKFHMN_03710 0.26 +1.7 590,979 - rimJ OKFHMN_03710 0.28 -2.4 590,990 + rimJ OKFHMN_03710 0.30 +0.7 590,991 - rimJ OKFHMN_03710 0.30 +1.1 591,010 + rimJ OKFHMN_03710 0.33 +1.7 591,173 - rimJ OKFHMN_03710 0.61 +0.8 591,404 + +0.5 591,405 - +0.7 591,407 - -0.3 591,411 - -0.3 591,432 - -0.2 591,441 + +0.3 591,446 - -0.5 591,449 - -0.3 591,451 + +1.3 591,452 - +1.3 591,512 - -2.5 591,674 - +1.9
Or see this region's nucleotide sequence