Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02695

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt OKFHMN_02695: OKFHMN_02695 - T3SS effector protein NleG8, at 430,491 to 431,141 _02695 Position (kb) 430 431 432Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 429.503 kb on - strandat 429.555 kb on + strandat 429.740 kb on - strandat 429.839 kb on - strandat 430.058 kb on + strandat 430.059 kb on - strandat 430.129 kb on + strandat 430.744 kb on + strand, within OKFHMN_02695at 430.855 kb on + strand, within OKFHMN_02695at 431.001 kb on - strand, within OKFHMN_02695at 431.497 kb on + strandat 431.613 kb on + strandat 432.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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429,503 - +1.1
429,555 + +1.3
429,740 - +1.2
429,839 - +1.1
430,058 + +1.7
430,059 - +1.7
430,129 + -4.9
430,744 + OKFHMN_02695 0.39 +0.5
430,855 + OKFHMN_02695 0.56 -0.6
431,001 - OKFHMN_02695 0.78 +0.1
431,497 + +0.7
431,613 + -0.3
432,135 - +0.7

Or see this region's nucleotide sequence