Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01270

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeM and yddA are separated by 317 nucleotidesyddA and yddB are separated by 37 nucleotides OKFHMN_01265: ydeM - anaerobic sulfatase maturase, at 149,022 to 150,179 ydeM OKFHMN_01270: yddA - Inner membrane ABC transporter ATP-binding protein YddA, at 150,497 to 152,155 yddA OKFHMN_01275: yddB - Uncharacterized protein YddB, at 152,193 to 154,565 yddB Position (kb) 150 151 152 153Strain fitness (log2 ratio) -1 0 1at 149.979 kb on + strand, within ydeMat 151.145 kb on - strand, within yddAat 151.992 kb on + strandat 152.008 kb on + strandat 152.008 kb on + strandat 152.207 kb on + strandat 152.268 kb on + strandat 152.829 kb on - strand, within yddB

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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149,979 + ydeM OKFHMN_01265 0.83 -0.3
151,145 - yddA OKFHMN_01270 0.39 -0.6
151,992 + -0.7
152,008 + -0.7
152,008 + +0.7
152,207 + +0.7
152,268 + +0.4
152,829 - yddB OKFHMN_01275 0.27 +0.4

Or see this region's nucleotide sequence