Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01035

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeJ and ydeI are separated by 275 nucleotidesydeI and dgcZ are separated by 254 nucleotidesdgcZ and mgtS are separated by 218 nucleotidesmgtS and ftrA are separated by 107 nucleotides OKFHMN_01025: ydeJ - 2-oxo-tetronate isomerase, at 97,421 to 97,939 ydeJ OKFHMN_01030: ydeI - YdeI family stress tolerance OB fold protein, at 98,215 to 98,607 ydeI OKFHMN_01035: dgcZ - diguanylate cyclase DgcZ, at 98,862 to 99,752 dgcZ OKFHMN_01045: mgtS - protein MgtS, at 99,971 to 100,066 mgtS OKFHMN_01050: ftrA - transcriptional regulator FtrA, at 100,174 to 101,145 ftrA Position (kb) 98 99 100Strain fitness (log2 ratio) -1 0 1at 97.988 kb on - strandat 98.105 kb on - strandat 100.058 kb on - strandat 100.068 kb on - strandat 100.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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97,988 - +1.7
98,105 - +0.2
100,058 - +1.3
100,068 - +0.6
100,220 - -0.8

Or see this region's nucleotide sequence