Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00700

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_00685 and OKFHMN_00690 are separated by 126 nucleotidesOKFHMN_00690 and OKFHMN_00695 are separated by 251 nucleotidesOKFHMN_00695 and OKFHMN_00700 are separated by 85 nucleotidesOKFHMN_00700 and OKFHMN_00705 are separated by 12 nucleotidesOKFHMN_00705 and OKFHMN_00710 are separated by 12 nucleotidesOKFHMN_00710 and OKFHMN_00715 are separated by 205 nucleotides OKFHMN_00685: OKFHMN_00685 - PerC family transcriptional regulator, at 41,696 to 41,968 _00685 OKFHMN_00690: OKFHMN_00690 - hypothetical protein, at 42,095 to 42,319 _00690 OKFHMN_00695: OKFHMN_00695 - Putative prophage protein, at 42,571 to 42,690 _00695 OKFHMN_00700: OKFHMN_00700 - capsid protein, at 42,776 to 43,831 _00700 OKFHMN_00705: OKFHMN_00705 - head decoration protein, at 43,844 to 44,179 _00705 OKFHMN_00710: OKFHMN_00710 - phage head-tail connector protein, at 44,192 to 44,605 _00710 OKFHMN_00715: OKFHMN_00715 - terminase, at 44,811 to 45,353 _00715 Position (kb) 42 43 44Strain fitness (log2 ratio) -1 0 1 2at 41.906 kb on + strand, within OKFHMN_00685at 41.922 kb on + strand, within OKFHMN_00685at 41.922 kb on + strand, within OKFHMN_00685at 41.966 kb on + strandat 41.966 kb on + strandat 42.051 kb on + strandat 42.055 kb on + strandat 42.567 kb on + strandat 42.608 kb on + strand, within OKFHMN_00695at 42.608 kb on + strand, within OKFHMN_00695at 43.114 kb on + strand, within OKFHMN_00700at 43.571 kb on + strand, within OKFHMN_00700at 43.844 kb on - strandat 44.282 kb on + strand, within OKFHMN_00710at 44.282 kb on + strand, within OKFHMN_00710at 44.369 kb on + strand, within OKFHMN_00710at 44.407 kb on + strand, within OKFHMN_00710at 44.407 kb on + strand, within OKFHMN_00710at 44.448 kb on + strand, within OKFHMN_00710at 44.448 kb on + strand, within OKFHMN_00710at 44.482 kb on + strand, within OKFHMN_00710at 44.546 kb on + strand, within OKFHMN_00710at 44.796 kb on + strandat 44.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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41,906 + OKFHMN_00685 0.77 -0.7
41,922 + OKFHMN_00685 0.83 -0.2
41,922 + OKFHMN_00685 0.83 -0.2
41,966 + +0.9
41,966 + +0.7
42,051 + +1.8
42,055 + +0.1
42,567 + +0.3
42,608 + OKFHMN_00695 0.31 -0.7
42,608 + OKFHMN_00695 0.31 -0.7
43,114 + OKFHMN_00700 0.32 +0.3
43,571 + OKFHMN_00700 0.75 +0.3
43,844 - -0.9
44,282 + OKFHMN_00710 0.22 +1.7
44,282 + OKFHMN_00710 0.22 +1.2
44,369 + OKFHMN_00710 0.43 +0.1
44,407 + OKFHMN_00710 0.52 +1.7
44,407 + OKFHMN_00710 0.52 +1.7
44,448 + OKFHMN_00710 0.62 +0.3
44,448 + OKFHMN_00710 0.62 +1.7
44,482 + OKFHMN_00710 0.70 -0.5
44,546 + OKFHMN_00710 0.86 +0.3
44,796 + -0.2
44,807 - +0.8

Or see this region's nucleotide sequence