Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02552

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02551 and OHPLBJKB_02552 are separated by 79 nucleotidesOHPLBJKB_02552 and OHPLBJKB_02553 are separated by 146 nucleotides OHPLBJKB_02551: OHPLBJKB_02551 - Inner membrane protein YcfT, at 2,663,773 to 2,664,846 _02551 OHPLBJKB_02552: OHPLBJKB_02552 - Transcription-repair-coupling factor, at 2,664,926 to 2,668,420 _02552 OHPLBJKB_02553: OHPLBJKB_02553 - putative L,D-transpeptidase YcfS, at 2,668,567 to 2,669,526 _02553 Position (kb) 2664 2665 2666 2667 2668 2669Strain fitness (log2 ratio) -2 -1 0 1 2at 2663.989 kb on + strand, within OHPLBJKB_02551at 2663.989 kb on + strand, within OHPLBJKB_02551at 2664.002 kb on + strand, within OHPLBJKB_02551at 2664.125 kb on + strand, within OHPLBJKB_02551at 2664.126 kb on - strand, within OHPLBJKB_02551at 2664.126 kb on - strand, within OHPLBJKB_02551at 2664.148 kb on + strand, within OHPLBJKB_02551at 2664.148 kb on + strand, within OHPLBJKB_02551at 2664.214 kb on + strand, within OHPLBJKB_02551at 2664.221 kb on + strand, within OHPLBJKB_02551at 2664.230 kb on - strand, within OHPLBJKB_02551at 2664.269 kb on + strand, within OHPLBJKB_02551at 2664.272 kb on + strand, within OHPLBJKB_02551at 2664.272 kb on + strand, within OHPLBJKB_02551at 2664.272 kb on + strand, within OHPLBJKB_02551at 2664.287 kb on + strand, within OHPLBJKB_02551at 2664.364 kb on + strand, within OHPLBJKB_02551at 2664.365 kb on - strand, within OHPLBJKB_02551at 2664.396 kb on - strand, within OHPLBJKB_02551at 2664.396 kb on - strand, within OHPLBJKB_02551at 2664.437 kb on + strand, within OHPLBJKB_02551at 2664.483 kb on + strand, within OHPLBJKB_02551at 2664.487 kb on - strand, within OHPLBJKB_02551at 2664.545 kb on - strand, within OHPLBJKB_02551at 2664.609 kb on + strand, within OHPLBJKB_02551at 2664.609 kb on + strand, within OHPLBJKB_02551at 2664.610 kb on - strand, within OHPLBJKB_02551at 2664.613 kb on + strand, within OHPLBJKB_02551at 2664.613 kb on + strand, within OHPLBJKB_02551at 2664.613 kb on + strand, within OHPLBJKB_02551at 2664.614 kb on - strand, within OHPLBJKB_02551at 2664.614 kb on - strand, within OHPLBJKB_02551at 2664.614 kb on - strand, within OHPLBJKB_02551at 2664.614 kb on - strand, within OHPLBJKB_02551at 2664.641 kb on + strand, within OHPLBJKB_02551at 2664.651 kb on - strand, within OHPLBJKB_02551at 2664.744 kb on + strandat 2664.745 kb on - strandat 2664.745 kb on - strandat 2664.745 kb on - strandat 2664.879 kb on + strandat 2664.917 kb on - strandat 2664.925 kb on + strandat 2664.926 kb on - strandat 2664.926 kb on - strandat 2664.926 kb on - strandat 2664.926 kb on - strandat 2664.935 kb on + strandat 2664.935 kb on + strandat 2664.947 kb on + strandat 2664.948 kb on - strandat 2664.993 kb on - strandat 2664.994 kb on + strandat 2664.994 kb on + strandat 2664.994 kb on + strandat 2665.117 kb on + strandat 2665.234 kb on + strandat 2665.235 kb on - strandat 2665.267 kb on - strandat 2665.306 kb on + strand, within OHPLBJKB_02552at 2665.312 kb on + strand, within OHPLBJKB_02552at 2665.590 kb on + strand, within OHPLBJKB_02552at 2665.591 kb on - strand, within OHPLBJKB_02552at 2665.591 kb on - strand, within OHPLBJKB_02552at 2665.702 kb on + strand, within OHPLBJKB_02552at 2665.702 kb on + strand, within OHPLBJKB_02552at 2665.702 kb on + strand, within OHPLBJKB_02552at 2665.702 kb on + strand, within OHPLBJKB_02552at 2665.703 kb on - strand, within OHPLBJKB_02552at 2665.703 kb on - strand, within OHPLBJKB_02552at 2665.703 kb on - strand, within OHPLBJKB_02552at 2665.703 kb on - strand, within OHPLBJKB_02552at 2665.703 kb on - strand, within OHPLBJKB_02552at 2665.703 kb on - strand, within OHPLBJKB_02552at 2665.703 kb on - strand, within OHPLBJKB_02552at 2665.703 kb on - strand, within OHPLBJKB_02552at 2665.706 kb on + strand, within OHPLBJKB_02552at 2665.720 kb on + strand, within OHPLBJKB_02552at 2665.731 kb on + strand, within OHPLBJKB_02552at 2665.731 kb on + strand, within OHPLBJKB_02552at 2665.732 kb on - strand, within OHPLBJKB_02552at 2665.797 kb on - strand, within OHPLBJKB_02552at 2665.810 kb on + strand, within OHPLBJKB_02552at 2665.989 kb on + strand, within OHPLBJKB_02552at 2665.989 kb on + strand, within OHPLBJKB_02552at 2666.031 kb on + strand, within OHPLBJKB_02552at 2666.031 kb on + strand, within OHPLBJKB_02552at 2666.032 kb on - strand, within OHPLBJKB_02552at 2666.099 kb on - strand, within OHPLBJKB_02552at 2666.189 kb on - strand, within OHPLBJKB_02552at 2666.209 kb on + strand, within OHPLBJKB_02552at 2666.210 kb on - strand, within OHPLBJKB_02552at 2666.291 kb on - strand, within OHPLBJKB_02552at 2666.291 kb on - strand, within OHPLBJKB_02552at 2666.531 kb on + strand, within OHPLBJKB_02552at 2666.531 kb on + strand, within OHPLBJKB_02552at 2666.531 kb on + strand, within OHPLBJKB_02552at 2666.531 kb on + strand, within OHPLBJKB_02552at 2666.532 kb on - strand, within OHPLBJKB_02552at 2666.532 kb on - strand, within OHPLBJKB_02552at 2666.532 kb on - strand, within OHPLBJKB_02552at 2666.532 kb on - strand, within OHPLBJKB_02552at 2666.683 kb on + strand, within OHPLBJKB_02552at 2666.683 kb on + strand, within OHPLBJKB_02552at 2666.687 kb on + strand, within OHPLBJKB_02552at 2666.688 kb on - strand, within OHPLBJKB_02552at 2666.688 kb on - strand, within OHPLBJKB_02552at 2666.742 kb on - strand, within OHPLBJKB_02552at 2666.808 kb on + strand, within OHPLBJKB_02552at 2666.813 kb on - strand, within OHPLBJKB_02552at 2666.872 kb on + strand, within OHPLBJKB_02552at 2666.910 kb on + strand, within OHPLBJKB_02552at 2666.910 kb on + strand, within OHPLBJKB_02552at 2666.911 kb on - strand, within OHPLBJKB_02552at 2666.911 kb on - strand, within OHPLBJKB_02552at 2666.970 kb on - strand, within OHPLBJKB_02552at 2667.142 kb on - strand, within OHPLBJKB_02552at 2667.187 kb on + strand, within OHPLBJKB_02552at 2667.199 kb on + strand, within OHPLBJKB_02552at 2667.350 kb on + strand, within OHPLBJKB_02552at 2667.351 kb on - strand, within OHPLBJKB_02552at 2667.411 kb on - strand, within OHPLBJKB_02552at 2667.414 kb on - strand, within OHPLBJKB_02552at 2667.419 kb on + strand, within OHPLBJKB_02552at 2667.419 kb on + strand, within OHPLBJKB_02552at 2667.419 kb on + strand, within OHPLBJKB_02552at 2667.574 kb on + strand, within OHPLBJKB_02552at 2667.575 kb on - strand, within OHPLBJKB_02552at 2667.704 kb on + strand, within OHPLBJKB_02552at 2667.705 kb on - strand, within OHPLBJKB_02552at 2667.896 kb on + strand, within OHPLBJKB_02552at 2667.896 kb on + strand, within OHPLBJKB_02552at 2667.896 kb on + strand, within OHPLBJKB_02552at 2667.896 kb on + strand, within OHPLBJKB_02552at 2667.896 kb on + strand, within OHPLBJKB_02552at 2667.897 kb on - strand, within OHPLBJKB_02552at 2667.897 kb on - strand, within OHPLBJKB_02552at 2667.897 kb on - strand, within OHPLBJKB_02552at 2667.898 kb on + strand, within OHPLBJKB_02552at 2667.898 kb on + strand, within OHPLBJKB_02552at 2668.060 kb on + strand, within OHPLBJKB_02552at 2668.061 kb on - strand, within OHPLBJKB_02552at 2668.061 kb on - strand, within OHPLBJKB_02552at 2668.424 kb on + strandat 2668.462 kb on + strandat 2668.511 kb on - strandat 2668.521 kb on + strandat 2668.522 kb on - strandat 2668.605 kb on + strandat 2668.775 kb on + strand, within OHPLBJKB_02553at 2668.776 kb on - strand, within OHPLBJKB_02553at 2668.801 kb on + strand, within OHPLBJKB_02553at 2668.827 kb on - strand, within OHPLBJKB_02553at 2668.885 kb on - strand, within OHPLBJKB_02553at 2668.903 kb on + strand, within OHPLBJKB_02553at 2668.906 kb on + strand, within OHPLBJKB_02553at 2668.906 kb on + strand, within OHPLBJKB_02553at 2668.906 kb on + strand, within OHPLBJKB_02553at 2668.907 kb on - strand, within OHPLBJKB_02553at 2668.907 kb on - strand, within OHPLBJKB_02553at 2668.907 kb on - strand, within OHPLBJKB_02553at 2668.907 kb on - strand, within OHPLBJKB_02553at 2668.946 kb on + strand, within OHPLBJKB_02553at 2668.947 kb on - strand, within OHPLBJKB_02553at 2668.947 kb on - strand, within OHPLBJKB_02553at 2668.947 kb on - strand, within OHPLBJKB_02553at 2668.950 kb on + strand, within OHPLBJKB_02553at 2669.058 kb on + strand, within OHPLBJKB_02553at 2669.058 kb on + strand, within OHPLBJKB_02553at 2669.059 kb on - strand, within OHPLBJKB_02553at 2669.059 kb on - strand, within OHPLBJKB_02553at 2669.155 kb on + strand, within OHPLBJKB_02553at 2669.214 kb on + strand, within OHPLBJKB_02553at 2669.339 kb on + strand, within OHPLBJKB_02553at 2669.339 kb on + strand, within OHPLBJKB_02553at 2669.340 kb on - strand, within OHPLBJKB_02553at 2669.340 kb on - strand, within OHPLBJKB_02553at 2669.340 kb on - strand, within OHPLBJKB_02553at 2669.392 kb on - strand, within OHPLBJKB_02553at 2669.400 kb on + strand, within OHPLBJKB_02553at 2669.418 kb on + strand, within OHPLBJKB_02553at 2669.418 kb on + strand, within OHPLBJKB_02553at 2669.419 kb on - strand, within OHPLBJKB_02553

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,663,989 + OHPLBJKB_02551 0.20 +0.0
2,663,989 + OHPLBJKB_02551 0.20 +0.0
2,664,002 + OHPLBJKB_02551 0.21 +1.2
2,664,125 + OHPLBJKB_02551 0.33 +0.3
2,664,126 - OHPLBJKB_02551 0.33 -0.1
2,664,126 - OHPLBJKB_02551 0.33 -0.3
2,664,148 + OHPLBJKB_02551 0.35 +0.1
2,664,148 + OHPLBJKB_02551 0.35 -0.2
2,664,214 + OHPLBJKB_02551 0.41 -1.6
2,664,221 + OHPLBJKB_02551 0.42 -1.5
2,664,230 - OHPLBJKB_02551 0.43 -0.6
2,664,269 + OHPLBJKB_02551 0.46 -2.1
2,664,272 + OHPLBJKB_02551 0.46 +0.4
2,664,272 + OHPLBJKB_02551 0.46 +0.9
2,664,272 + OHPLBJKB_02551 0.46 +0.4
2,664,287 + OHPLBJKB_02551 0.48 -1.1
2,664,364 + OHPLBJKB_02551 0.55 +1.1
2,664,365 - OHPLBJKB_02551 0.55 +0.8
2,664,396 - OHPLBJKB_02551 0.58 +0.1
2,664,396 - OHPLBJKB_02551 0.58 -1.2
2,664,437 + OHPLBJKB_02551 0.62 -0.4
2,664,483 + OHPLBJKB_02551 0.66 +0.1
2,664,487 - OHPLBJKB_02551 0.66 -0.3
2,664,545 - OHPLBJKB_02551 0.72 -1.0
2,664,609 + OHPLBJKB_02551 0.78 +1.2
2,664,609 + OHPLBJKB_02551 0.78 -1.3
2,664,610 - OHPLBJKB_02551 0.78 +0.6
2,664,613 + OHPLBJKB_02551 0.78 +0.2
2,664,613 + OHPLBJKB_02551 0.78 +0.0
2,664,613 + OHPLBJKB_02551 0.78 +0.1
2,664,614 - OHPLBJKB_02551 0.78 -1.9
2,664,614 - OHPLBJKB_02551 0.78 -0.9
2,664,614 - OHPLBJKB_02551 0.78 -1.2
2,664,614 - OHPLBJKB_02551 0.78 -0.9
2,664,641 + OHPLBJKB_02551 0.81 +0.4
2,664,651 - OHPLBJKB_02551 0.82 -0.5
2,664,744 + -0.2
2,664,745 - -0.5
2,664,745 - -0.1
2,664,745 - +0.1
2,664,879 + +0.3
2,664,917 - +0.4
2,664,925 + +0.6
2,664,926 - +0.5
2,664,926 - +0.7
2,664,926 - -1.7
2,664,926 - +1.3
2,664,935 + -0.3
2,664,935 + -0.1
2,664,947 + -0.3
2,664,948 - +0.5
2,664,993 - +0.4
2,664,994 + -0.1
2,664,994 + -0.8
2,664,994 + -0.6
2,665,117 + -0.1
2,665,234 + -0.2
2,665,235 - -0.2
2,665,267 - -0.1
2,665,306 + OHPLBJKB_02552 0.11 -0.3
2,665,312 + OHPLBJKB_02552 0.11 -0.5
2,665,590 + OHPLBJKB_02552 0.19 -0.1
2,665,591 - OHPLBJKB_02552 0.19 -2.7
2,665,591 - OHPLBJKB_02552 0.19 -1.5
2,665,702 + OHPLBJKB_02552 0.22 +0.4
2,665,702 + OHPLBJKB_02552 0.22 +0.4
2,665,702 + OHPLBJKB_02552 0.22 -0.3
2,665,702 + OHPLBJKB_02552 0.22 -1.1
2,665,703 - OHPLBJKB_02552 0.22 -0.2
2,665,703 - OHPLBJKB_02552 0.22 +1.0
2,665,703 - OHPLBJKB_02552 0.22 -1.4
2,665,703 - OHPLBJKB_02552 0.22 +0.0
2,665,703 - OHPLBJKB_02552 0.22 -0.1
2,665,703 - OHPLBJKB_02552 0.22 +0.3
2,665,703 - OHPLBJKB_02552 0.22 +0.2
2,665,703 - OHPLBJKB_02552 0.22 +0.4
2,665,706 + OHPLBJKB_02552 0.22 +0.4
2,665,720 + OHPLBJKB_02552 0.23 +0.9
2,665,731 + OHPLBJKB_02552 0.23 -0.7
2,665,731 + OHPLBJKB_02552 0.23 +0.0
2,665,732 - OHPLBJKB_02552 0.23 -0.4
2,665,797 - OHPLBJKB_02552 0.25 -0.6
2,665,810 + OHPLBJKB_02552 0.25 +0.6
2,665,989 + OHPLBJKB_02552 0.30 +1.1
2,665,989 + OHPLBJKB_02552 0.30 -0.2
2,666,031 + OHPLBJKB_02552 0.32 -1.6
2,666,031 + OHPLBJKB_02552 0.32 +0.1
2,666,032 - OHPLBJKB_02552 0.32 +0.7
2,666,099 - OHPLBJKB_02552 0.34 -1.9
2,666,189 - OHPLBJKB_02552 0.36 +0.2
2,666,209 + OHPLBJKB_02552 0.37 -0.3
2,666,210 - OHPLBJKB_02552 0.37 -0.1
2,666,291 - OHPLBJKB_02552 0.39 -0.6
2,666,291 - OHPLBJKB_02552 0.39 -0.1
2,666,531 + OHPLBJKB_02552 0.46 +0.0
2,666,531 + OHPLBJKB_02552 0.46 -0.6
2,666,531 + OHPLBJKB_02552 0.46 -0.3
2,666,531 + OHPLBJKB_02552 0.46 -0.5
2,666,532 - OHPLBJKB_02552 0.46 -2.2
2,666,532 - OHPLBJKB_02552 0.46 -1.4
2,666,532 - OHPLBJKB_02552 0.46 -0.2
2,666,532 - OHPLBJKB_02552 0.46 +0.1
2,666,683 + OHPLBJKB_02552 0.50 +0.4
2,666,683 + OHPLBJKB_02552 0.50 +0.2
2,666,687 + OHPLBJKB_02552 0.50 +0.4
2,666,688 - OHPLBJKB_02552 0.50 +0.9
2,666,688 - OHPLBJKB_02552 0.50 +0.7
2,666,742 - OHPLBJKB_02552 0.52 +0.8
2,666,808 + OHPLBJKB_02552 0.54 -0.1
2,666,813 - OHPLBJKB_02552 0.54 -0.2
2,666,872 + OHPLBJKB_02552 0.56 +0.5
2,666,910 + OHPLBJKB_02552 0.57 +0.1
2,666,910 + OHPLBJKB_02552 0.57 -0.6
2,666,911 - OHPLBJKB_02552 0.57 -1.5
2,666,911 - OHPLBJKB_02552 0.57 -0.8
2,666,970 - OHPLBJKB_02552 0.58 +0.5
2,667,142 - OHPLBJKB_02552 0.63 -1.9
2,667,187 + OHPLBJKB_02552 0.65 -0.4
2,667,199 + OHPLBJKB_02552 0.65 +0.3
2,667,350 + OHPLBJKB_02552 0.69 -0.4
2,667,351 - OHPLBJKB_02552 0.69 -1.2
2,667,411 - OHPLBJKB_02552 0.71 +0.8
2,667,414 - OHPLBJKB_02552 0.71 -2.2
2,667,419 + OHPLBJKB_02552 0.71 -1.0
2,667,419 + OHPLBJKB_02552 0.71 +1.8
2,667,419 + OHPLBJKB_02552 0.71 -0.1
2,667,574 + OHPLBJKB_02552 0.76 -2.0
2,667,575 - OHPLBJKB_02552 0.76 -0.5
2,667,704 + OHPLBJKB_02552 0.79 -2.2
2,667,705 - OHPLBJKB_02552 0.80 -0.3
2,667,896 + OHPLBJKB_02552 0.85 -0.2
2,667,896 + OHPLBJKB_02552 0.85 +0.4
2,667,896 + OHPLBJKB_02552 0.85 -0.6
2,667,896 + OHPLBJKB_02552 0.85 +0.9
2,667,896 + OHPLBJKB_02552 0.85 -0.1
2,667,897 - OHPLBJKB_02552 0.85 -0.3
2,667,897 - OHPLBJKB_02552 0.85 -0.6
2,667,897 - OHPLBJKB_02552 0.85 -1.0
2,667,898 + OHPLBJKB_02552 0.85 +0.2
2,667,898 + OHPLBJKB_02552 0.85 -0.4
2,668,060 + OHPLBJKB_02552 0.90 +0.3
2,668,061 - OHPLBJKB_02552 0.90 -0.6
2,668,061 - OHPLBJKB_02552 0.90 +0.6
2,668,424 + +0.2
2,668,462 + -0.6
2,668,511 - -0.4
2,668,521 + -1.4
2,668,522 - +0.1
2,668,605 + +1.3
2,668,775 + OHPLBJKB_02553 0.22 -0.2
2,668,776 - OHPLBJKB_02553 0.22 +0.9
2,668,801 + OHPLBJKB_02553 0.24 +0.1
2,668,827 - OHPLBJKB_02553 0.27 +0.2
2,668,885 - OHPLBJKB_02553 0.33 -0.6
2,668,903 + OHPLBJKB_02553 0.35 +1.0
2,668,906 + OHPLBJKB_02553 0.35 -0.4
2,668,906 + OHPLBJKB_02553 0.35 +0.0
2,668,906 + OHPLBJKB_02553 0.35 +0.7
2,668,907 - OHPLBJKB_02553 0.35 +1.5
2,668,907 - OHPLBJKB_02553 0.35 +1.4
2,668,907 - OHPLBJKB_02553 0.35 -1.0
2,668,907 - OHPLBJKB_02553 0.35 +0.4
2,668,946 + OHPLBJKB_02553 0.39 -0.7
2,668,947 - OHPLBJKB_02553 0.40 -2.2
2,668,947 - OHPLBJKB_02553 0.40 -0.3
2,668,947 - OHPLBJKB_02553 0.40 -1.5
2,668,950 + OHPLBJKB_02553 0.40 +0.4
2,669,058 + OHPLBJKB_02553 0.51 +0.2
2,669,058 + OHPLBJKB_02553 0.51 -0.4
2,669,059 - OHPLBJKB_02553 0.51 -1.6
2,669,059 - OHPLBJKB_02553 0.51 -0.5
2,669,155 + OHPLBJKB_02553 0.61 +1.3
2,669,214 + OHPLBJKB_02553 0.67 +0.5
2,669,339 + OHPLBJKB_02553 0.80 +0.3
2,669,339 + OHPLBJKB_02553 0.80 +0.0
2,669,340 - OHPLBJKB_02553 0.81 +0.9
2,669,340 - OHPLBJKB_02553 0.81 +0.4
2,669,340 - OHPLBJKB_02553 0.81 +0.7
2,669,392 - OHPLBJKB_02553 0.86 -0.1
2,669,400 + OHPLBJKB_02553 0.87 -1.7
2,669,418 + OHPLBJKB_02553 0.89 +0.2
2,669,418 + OHPLBJKB_02553 0.89 -0.9
2,669,419 - OHPLBJKB_02553 0.89 -1.2

Or see this region's nucleotide sequence