Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccmA and OKGIIK_15150 overlap by 4 nucleotides OKGIIK_15150 and OKGIIK_15155 are separated by 21 nucleotides OKGIIK_15155 and splB are separated by 39 nucleotides
OKGIIK_15145: ccmA - ABC transporter ATP-binding protein, at 3,292,932 to 3,293,825
ccmA
OKGIIK_15150: OKGIIK_15150 - hypothetical protein, at 3,293,822 to 3,294,796
_15150
OKGIIK_15155: OKGIIK_15155 - hypothetical protein, at 3,294,818 to 3,295,297
_15155
OKGIIK_15160: splB - DNA repair photolyase, at 3,295,337 to 3,296,455
splB
Position (kb)
3294
3295
3296 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3293.847 kb on + strand at 3293.847 kb on + strand at 3293.848 kb on - strand at 3293.848 kb on - strand at 3293.848 kb on - strand at 3293.848 kb on - strand at 3293.848 kb on - strand at 3293.855 kb on + strand at 3293.889 kb on + strand at 3293.889 kb on + strand at 3293.889 kb on + strand at 3293.889 kb on + strand at 3293.889 kb on + strand at 3293.889 kb on + strand at 3293.889 kb on + strand at 3293.889 kb on + strand at 3293.889 kb on + strand at 3293.890 kb on - strand at 3293.890 kb on - strand at 3293.890 kb on - strand at 3293.890 kb on - strand at 3293.890 kb on - strand at 3293.890 kb on - strand at 3293.890 kb on - strand at 3293.890 kb on - strand at 3293.890 kb on - strand at 3293.890 kb on - strand at 3293.890 kb on - strand at 3293.978 kb on + strand, within OKGIIK_15150 at 3293.978 kb on + strand, within OKGIIK_15150 at 3293.978 kb on + strand, within OKGIIK_15150 at 3293.978 kb on + strand, within OKGIIK_15150 at 3293.979 kb on - strand, within OKGIIK_15150 at 3293.979 kb on - strand, within OKGIIK_15150 at 3293.979 kb on - strand, within OKGIIK_15150 at 3293.979 kb on - strand, within OKGIIK_15150 at 3293.979 kb on - strand, within OKGIIK_15150 at 3293.979 kb on - strand, within OKGIIK_15150 at 3293.979 kb on - strand, within OKGIIK_15150 at 3293.979 kb on - strand, within OKGIIK_15150 at 3293.979 kb on - strand, within OKGIIK_15150 at 3294.101 kb on + strand, within OKGIIK_15150 at 3294.102 kb on - strand, within OKGIIK_15150 at 3294.227 kb on + strand, within OKGIIK_15150 at 3294.228 kb on - strand, within OKGIIK_15150 at 3294.228 kb on - strand, within OKGIIK_15150 at 3294.587 kb on + strand, within OKGIIK_15150 at 3294.588 kb on - strand, within OKGIIK_15150 at 3294.588 kb on - strand, within OKGIIK_15150 at 3294.657 kb on + strand, within OKGIIK_15150 at 3294.657 kb on + strand, within OKGIIK_15150 at 3294.657 kb on + strand, within OKGIIK_15150 at 3294.658 kb on - strand, within OKGIIK_15150 at 3294.658 kb on - strand, within OKGIIK_15150 at 3294.658 kb on - strand, within OKGIIK_15150 at 3294.658 kb on - strand, within OKGIIK_15150 at 3294.658 kb on - strand, within OKGIIK_15150 at 3294.658 kb on - strand, within OKGIIK_15150 at 3294.680 kb on + strand, within OKGIIK_15150 at 3294.680 kb on + strand, within OKGIIK_15150 at 3294.681 kb on - strand, within OKGIIK_15150 at 3294.681 kb on - strand, within OKGIIK_15150 at 3294.706 kb on + strand at 3294.706 kb on + strand at 3294.706 kb on + strand at 3294.706 kb on + strand at 3294.706 kb on + strand at 3294.706 kb on + strand at 3294.706 kb on + strand at 3294.706 kb on + strand at 3294.706 kb on + strand at 3294.707 kb on - strand at 3294.707 kb on - strand at 3294.714 kb on + strand at 3294.714 kb on + strand at 3294.714 kb on + strand at 3294.714 kb on + strand at 3294.714 kb on + strand at 3294.714 kb on + strand at 3294.714 kb on + strand at 3294.714 kb on + strand at 3294.714 kb on + strand at 3294.715 kb on - strand at 3294.715 kb on - strand at 3294.715 kb on - strand at 3294.715 kb on - strand at 3294.715 kb on - strand at 3294.715 kb on - strand at 3294.715 kb on - strand at 3294.715 kb on - strand at 3294.715 kb on - strand at 3294.715 kb on - strand at 3294.715 kb on - strand at 3294.724 kb on + strand at 3294.933 kb on + strand, within OKGIIK_15155 at 3294.934 kb on - strand, within OKGIIK_15155 at 3294.934 kb on - strand, within OKGIIK_15155 at 3294.996 kb on + strand, within OKGIIK_15155 at 3294.996 kb on + strand, within OKGIIK_15155 at 3294.996 kb on + strand, within OKGIIK_15155 at 3294.996 kb on + strand, within OKGIIK_15155 at 3294.996 kb on + strand, within OKGIIK_15155 at 3294.996 kb on + strand, within OKGIIK_15155 at 3294.997 kb on - strand, within OKGIIK_15155 at 3294.997 kb on - strand, within OKGIIK_15155 at 3294.997 kb on - strand, within OKGIIK_15155 at 3295.126 kb on + strand, within OKGIIK_15155 at 3295.126 kb on + strand, within OKGIIK_15155 at 3295.126 kb on + strand, within OKGIIK_15155 at 3295.126 kb on + strand, within OKGIIK_15155 at 3295.126 kb on + strand, within OKGIIK_15155 at 3295.126 kb on + strand, within OKGIIK_15155 at 3295.126 kb on + strand, within OKGIIK_15155 at 3295.126 kb on + strand, within OKGIIK_15155 at 3295.126 kb on + strand, within OKGIIK_15155 at 3295.127 kb on - strand, within OKGIIK_15155 at 3295.127 kb on - strand, within OKGIIK_15155 at 3295.127 kb on - strand, within OKGIIK_15155 at 3295.127 kb on - strand, within OKGIIK_15155 at 3295.127 kb on - strand, within OKGIIK_15155 at 3295.127 kb on - strand, within OKGIIK_15155 at 3295.127 kb on - strand, within OKGIIK_15155 at 3295.127 kb on - strand, within OKGIIK_15155 at 3295.127 kb on - strand, within OKGIIK_15155 at 3295.127 kb on - strand, within OKGIIK_15155 at 3295.512 kb on + strand, within splB at 3295.512 kb on + strand, within splB at 3295.636 kb on - strand, within splB at 3295.636 kb on - strand, within splB at 3295.636 kb on - strand, within splB at 3295.676 kb on + strand, within splB at 3296.004 kb on + strand, within splB at 3296.005 kb on - strand, within splB at 3296.026 kb on + strand, within splB at 3296.026 kb on + strand, within splB at 3296.142 kb on + strand, within splB at 3296.142 kb on + strand, within splB at 3296.142 kb on + strand, within splB at 3296.142 kb on + strand, within splB at 3296.142 kb on + strand, within splB at 3296.142 kb on + strand, within splB at 3296.142 kb on + strand, within splB at 3296.142 kb on + strand, within splB at 3296.142 kb on + strand, within splB at 3296.143 kb on - strand, within splB at 3296.143 kb on - strand, within splB at 3296.143 kb on - strand, within splB at 3296.143 kb on - strand, within splB at 3296.143 kb on - strand, within splB at 3296.169 kb on + strand, within splB at 3296.170 kb on - strand, within splB at 3296.170 kb on - strand, within splB at 3296.170 kb on - strand, within splB at 3296.170 kb on - strand, within splB at 3296.170 kb on - strand, within splB at 3296.170 kb on - strand, within splB at 3296.170 kb on - strand, within splB at 3296.170 kb on - strand, within splB
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 3,293,847 + +1.4 3,293,847 + +0.8 3,293,848 - +0.7 3,293,848 - -2.1 3,293,848 - -2.2 3,293,848 - +1.4 3,293,848 - -0.0 3,293,855 + +1.4 3,293,889 + -0.4 3,293,889 + -2.6 3,293,889 + +1.1 3,293,889 + +0.8 3,293,889 + +0.8 3,293,889 + +0.4 3,293,889 + +0.1 3,293,889 + +1.6 3,293,889 + -0.3 3,293,890 - +2.2 3,293,890 - +0.4 3,293,890 - +0.1 3,293,890 - -0.9 3,293,890 - -0.3 3,293,890 - +0.8 3,293,890 - -1.2 3,293,890 - +0.3 3,293,890 - +0.1 3,293,890 - +0.9 3,293,890 - +0.4 3,293,978 + OKGIIK_15150 0.16 +0.9 3,293,978 + OKGIIK_15150 0.16 +0.2 3,293,978 + OKGIIK_15150 0.16 -1.2 3,293,978 + OKGIIK_15150 0.16 -0.3 3,293,979 - OKGIIK_15150 0.16 +0.2 3,293,979 - OKGIIK_15150 0.16 +1.4 3,293,979 - OKGIIK_15150 0.16 -0.9 3,293,979 - OKGIIK_15150 0.16 +0.3 3,293,979 - OKGIIK_15150 0.16 -1.6 3,293,979 - OKGIIK_15150 0.16 -0.6 3,293,979 - OKGIIK_15150 0.16 +0.7 3,293,979 - OKGIIK_15150 0.16 -1.1 3,293,979 - OKGIIK_15150 0.16 -0.7 3,294,101 + OKGIIK_15150 0.29 +0.7 3,294,102 - OKGIIK_15150 0.29 +0.4 3,294,227 + OKGIIK_15150 0.42 +0.7 3,294,228 - OKGIIK_15150 0.42 -0.1 3,294,228 - OKGIIK_15150 0.42 -1.6 3,294,587 + OKGIIK_15150 0.78 -2.3 3,294,588 - OKGIIK_15150 0.79 -0.0 3,294,588 - OKGIIK_15150 0.79 -0.9 3,294,657 + OKGIIK_15150 0.86 +0.4 3,294,657 + OKGIIK_15150 0.86 +0.2 3,294,657 + OKGIIK_15150 0.86 -1.6 3,294,658 - OKGIIK_15150 0.86 +0.0 3,294,658 - OKGIIK_15150 0.86 +0.7 3,294,658 - OKGIIK_15150 0.86 -0.7 3,294,658 - OKGIIK_15150 0.86 +0.4 3,294,658 - OKGIIK_15150 0.86 -0.5 3,294,658 - OKGIIK_15150 0.86 -1.0 3,294,680 + OKGIIK_15150 0.88 +0.4 3,294,680 + OKGIIK_15150 0.88 -0.5 3,294,681 - OKGIIK_15150 0.88 -2.3 3,294,681 - OKGIIK_15150 0.88 -0.7 3,294,706 + +1.1 3,294,706 + -0.3 3,294,706 + +0.7 3,294,706 + -1.2 3,294,706 + +0.6 3,294,706 + +0.3 3,294,706 + +0.7 3,294,706 + +0.7 3,294,706 + +1.7 3,294,707 - -0.6 3,294,707 - +0.5 3,294,714 + +1.4 3,294,714 + +0.0 3,294,714 + +0.8 3,294,714 + -0.1 3,294,714 + +1.1 3,294,714 + -1.4 3,294,714 + +0.9 3,294,714 + -0.5 3,294,714 + -0.5 3,294,715 - +0.0 3,294,715 - -1.5 3,294,715 - -1.1 3,294,715 - +1.7 3,294,715 - +0.3 3,294,715 - +1.3 3,294,715 - -0.6 3,294,715 - -0.6 3,294,715 - +0.7 3,294,715 - +1.3 3,294,715 - -0.1 3,294,724 + -1.8 3,294,933 + OKGIIK_15155 0.24 +0.4 3,294,934 - OKGIIK_15155 0.24 -1.6 3,294,934 - OKGIIK_15155 0.24 -1.4 3,294,996 + OKGIIK_15155 0.37 +0.1 3,294,996 + OKGIIK_15155 0.37 +0.7 3,294,996 + OKGIIK_15155 0.37 +1.1 3,294,996 + OKGIIK_15155 0.37 -0.2 3,294,996 + OKGIIK_15155 0.37 +1.7 3,294,996 + OKGIIK_15155 0.37 -1.2 3,294,997 - OKGIIK_15155 0.37 -0.4 3,294,997 - OKGIIK_15155 0.37 -1.4 3,294,997 - OKGIIK_15155 0.37 +0.7 3,295,126 + OKGIIK_15155 0.64 +0.4 3,295,126 + OKGIIK_15155 0.64 +0.4 3,295,126 + OKGIIK_15155 0.64 +0.2 3,295,126 + OKGIIK_15155 0.64 -1.2 3,295,126 + OKGIIK_15155 0.64 -0.9 3,295,126 + OKGIIK_15155 0.64 -0.6 3,295,126 + OKGIIK_15155 0.64 +0.8 3,295,126 + OKGIIK_15155 0.64 +0.1 3,295,126 + OKGIIK_15155 0.64 -1.8 3,295,127 - OKGIIK_15155 0.64 -1.8 3,295,127 - OKGIIK_15155 0.64 -0.2 3,295,127 - OKGIIK_15155 0.64 -0.5 3,295,127 - OKGIIK_15155 0.64 +0.2 3,295,127 - OKGIIK_15155 0.64 -1.4 3,295,127 - OKGIIK_15155 0.64 +1.4 3,295,127 - OKGIIK_15155 0.64 -1.4 3,295,127 - OKGIIK_15155 0.64 +1.0 3,295,127 - OKGIIK_15155 0.64 +0.7 3,295,127 - OKGIIK_15155 0.64 +0.9 3,295,512 + splB OKGIIK_15160 0.16 +1.0 3,295,512 + splB OKGIIK_15160 0.16 +0.2 3,295,636 - splB OKGIIK_15160 0.27 -0.6 3,295,636 - splB OKGIIK_15160 0.27 +0.5 3,295,636 - splB OKGIIK_15160 0.27 -0.2 3,295,676 + splB OKGIIK_15160 0.30 -1.8 3,296,004 + splB OKGIIK_15160 0.60 -0.6 3,296,005 - splB OKGIIK_15160 0.60 -2.2 3,296,026 + splB OKGIIK_15160 0.62 -0.6 3,296,026 + splB OKGIIK_15160 0.62 -0.8 3,296,142 + splB OKGIIK_15160 0.72 +0.4 3,296,142 + splB OKGIIK_15160 0.72 +0.2 3,296,142 + splB OKGIIK_15160 0.72 +0.5 3,296,142 + splB OKGIIK_15160 0.72 +0.9 3,296,142 + splB OKGIIK_15160 0.72 +1.1 3,296,142 + splB OKGIIK_15160 0.72 -0.3 3,296,142 + splB OKGIIK_15160 0.72 -0.9 3,296,142 + splB OKGIIK_15160 0.72 -0.2 3,296,142 + splB OKGIIK_15160 0.72 -0.2 3,296,143 - splB OKGIIK_15160 0.72 +0.5 3,296,143 - splB OKGIIK_15160 0.72 +0.8 3,296,143 - splB OKGIIK_15160 0.72 +1.2 3,296,143 - splB OKGIIK_15160 0.72 -1.3 3,296,143 - splB OKGIIK_15160 0.72 -0.2 3,296,169 + splB OKGIIK_15160 0.74 +1.0 3,296,170 - splB OKGIIK_15160 0.74 +0.6 3,296,170 - splB OKGIIK_15160 0.74 -1.2 3,296,170 - splB OKGIIK_15160 0.74 -1.9 3,296,170 - splB OKGIIK_15160 0.74 +1.4 3,296,170 - splB OKGIIK_15160 0.74 -0.7 3,296,170 - splB OKGIIK_15160 0.74 -0.9 3,296,170 - splB OKGIIK_15160 0.74 -0.9 3,296,170 - splB OKGIIK_15160 0.74 -0.4
Or see this region's nucleotide sequence