Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_07680 and ccoS overlap by 4 nucleotides ccoS and OKGIIK_07690 overlap by 104 nucleotides
OKGIIK_07680: OKGIIK_07680 - ATPase P, at 1,696,852 to 1,699,110
_07680
OKGIIK_07685: ccoS - cbb3-type cytochrome oxidase assembly protein CcoS, at 1,699,107 to 1,699,349
ccoS
OKGIIK_07690: OKGIIK_07690 - Acetyl-CoA hydrolase, at 1,699,246 to 1,701,243
_07690
Position (kb)
1699
1700 Strain fitness (log2 ratio)
-1
0
1 at 1699.747 kb on + strand, within OKGIIK_07690 at 1699.748 kb on + strand, within OKGIIK_07690 at 1699.748 kb on + strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.799 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1700.048 kb on + strand, within OKGIIK_07690 at 1700.049 kb on - strand, within OKGIIK_07690 at 1700.126 kb on + strand, within OKGIIK_07690 at 1700.126 kb on + strand, within OKGIIK_07690 at 1700.126 kb on + strand, within OKGIIK_07690 at 1700.127 kb on - strand, within OKGIIK_07690 at 1700.127 kb on - strand, within OKGIIK_07690 at 1700.127 kb on - strand, within OKGIIK_07690 at 1700.165 kb on + strand, within OKGIIK_07690 at 1700.165 kb on + strand, within OKGIIK_07690 at 1700.165 kb on + strand, within OKGIIK_07690 at 1700.165 kb on + strand, within OKGIIK_07690 at 1700.165 kb on + strand, within OKGIIK_07690 at 1700.165 kb on + strand, within OKGIIK_07690 at 1700.166 kb on - strand, within OKGIIK_07690 at 1700.166 kb on - strand, within OKGIIK_07690 at 1700.306 kb on + strand, within OKGIIK_07690
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 1,699,747 + OKGIIK_07690 0.25 +0.0 1,699,748 + OKGIIK_07690 0.25 +1.3 1,699,748 + OKGIIK_07690 0.25 +0.6 1,699,749 - OKGIIK_07690 0.25 -0.6 1,699,749 - OKGIIK_07690 0.25 +0.5 1,699,749 - OKGIIK_07690 0.25 +0.9 1,699,749 - OKGIIK_07690 0.25 +1.4 1,699,799 + OKGIIK_07690 0.28 +1.6 1,699,907 + OKGIIK_07690 0.33 -0.5 1,699,907 + OKGIIK_07690 0.33 +0.7 1,699,907 + OKGIIK_07690 0.33 +0.9 1,699,907 + OKGIIK_07690 0.33 -0.0 1,699,908 - OKGIIK_07690 0.33 +0.9 1,699,908 - OKGIIK_07690 0.33 -0.6 1,699,908 - OKGIIK_07690 0.33 -0.2 1,699,908 - OKGIIK_07690 0.33 +0.4 1,699,908 - OKGIIK_07690 0.33 +1.4 1,699,908 - OKGIIK_07690 0.33 +0.4 1,699,908 - OKGIIK_07690 0.33 +1.0 1,699,908 - OKGIIK_07690 0.33 -0.9 1,700,048 + OKGIIK_07690 0.40 -1.2 1,700,049 - OKGIIK_07690 0.40 +0.0 1,700,126 + OKGIIK_07690 0.44 -0.3 1,700,126 + OKGIIK_07690 0.44 -0.3 1,700,126 + OKGIIK_07690 0.44 +0.4 1,700,127 - OKGIIK_07690 0.44 +0.3 1,700,127 - OKGIIK_07690 0.44 -0.5 1,700,127 - OKGIIK_07690 0.44 -1.0 1,700,165 + OKGIIK_07690 0.46 +1.4 1,700,165 + OKGIIK_07690 0.46 +0.4 1,700,165 + OKGIIK_07690 0.46 +0.4 1,700,165 + OKGIIK_07690 0.46 +0.7 1,700,165 + OKGIIK_07690 0.46 +0.4 1,700,165 + OKGIIK_07690 0.46 -0.0 1,700,166 - OKGIIK_07690 0.46 +0.9 1,700,166 - OKGIIK_07690 0.46 -0.3 1,700,306 + OKGIIK_07690 0.53 +0.0
Or see this region's nucleotide sequence