Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02620 and OKGIIK_02625 are separated by 108 nucleotides OKGIIK_02625 and flgM overlap by 4 nucleotides flgM and flgA are separated by 109 nucleotides
OKGIIK_02620: OKGIIK_02620 - Diguanylate phosphodiesterase, at 611,715 to 613,007
_02620
OKGIIK_02625: OKGIIK_02625 - Flagellar biosynthesis protein FlgN, at 613,116 to 613,562
_02625
OKGIIK_02630: flgM - flagellar biosynthesis anti-sigma factor FlgM, at 613,559 to 613,882
flgM
OKGIIK_02635: flgA - flagellar basal body P-ring formation protein FlgA, at 613,992 to 614,699
flgA
Position (kb) 613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 612.202 kb on + strand, within OKGIIK_02620 at 612.202 kb on + strand, within OKGIIK_02620 at 612.202 kb on + strand, within OKGIIK_02620 at 612.202 kb on + strand, within OKGIIK_02620 at 612.202 kb on + strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.376 kb on + strand, within OKGIIK_02620 at 612.377 kb on - strand, within OKGIIK_02620 at 612.377 kb on - strand, within OKGIIK_02620 at 612.421 kb on + strand, within OKGIIK_02620 at 612.421 kb on + strand, within OKGIIK_02620 at 612.421 kb on + strand, within OKGIIK_02620 at 612.421 kb on + strand, within OKGIIK_02620 at 612.421 kb on + strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.472 kb on + strand, within OKGIIK_02620 at 612.472 kb on + strand, within OKGIIK_02620 at 612.473 kb on - strand, within OKGIIK_02620 at 612.473 kb on - strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.535 kb on - strand, within OKGIIK_02620 at 612.535 kb on - strand, within OKGIIK_02620 at 612.535 kb on - strand, within OKGIIK_02620 at 612.535 kb on - strand, within OKGIIK_02620 at 612.670 kb on + strand, within OKGIIK_02620 at 612.671 kb on - strand, within OKGIIK_02620 at 612.771 kb on + strand, within OKGIIK_02620 at 612.772 kb on - strand, within OKGIIK_02620 at 612.772 kb on - strand, within OKGIIK_02620 at 612.866 kb on - strand, within OKGIIK_02620 at 612.866 kb on - strand, within OKGIIK_02620 at 612.940 kb on + strand at 612.940 kb on + strand at 612.940 kb on + strand at 612.940 kb on + strand at 612.940 kb on + strand at 612.940 kb on + strand at 612.941 kb on - strand at 612.941 kb on - strand at 612.941 kb on - strand at 612.941 kb on - strand at 612.941 kb on - strand at 612.999 kb on + strand at 612.999 kb on + strand at 612.999 kb on + strand at 612.999 kb on + strand at 613.000 kb on - strand at 613.000 kb on - strand at 613.028 kb on + strand at 613.065 kb on + strand at 613.065 kb on + strand at 613.065 kb on + strand at 613.066 kb on - strand at 613.066 kb on - strand at 613.066 kb on - strand at 613.066 kb on - strand at 613.066 kb on - strand at 613.174 kb on + strand, within OKGIIK_02625 at 613.174 kb on + strand, within OKGIIK_02625 at 613.174 kb on + strand, within OKGIIK_02625 at 613.175 kb on - strand, within OKGIIK_02625 at 613.175 kb on - strand, within OKGIIK_02625 at 613.224 kb on + strand, within OKGIIK_02625 at 613.224 kb on + strand, within OKGIIK_02625 at 613.224 kb on + strand, within OKGIIK_02625 at 613.224 kb on + strand, within OKGIIK_02625 at 613.224 kb on + strand, within OKGIIK_02625 at 613.225 kb on - strand, within OKGIIK_02625 at 613.776 kb on - strand, within flgM at 613.913 kb on - strand at 613.913 kb on - strand at 613.913 kb on - strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.962 kb on + strand at 613.962 kb on + strand at 613.962 kb on + strand at 613.963 kb on - strand at 613.963 kb on - strand at 613.963 kb on - strand at 614.269 kb on + strand, within flgA at 614.269 kb on + strand, within flgA
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 612,202 + OKGIIK_02620 0.38 +2.9 612,202 + OKGIIK_02620 0.38 -1.7 612,202 + OKGIIK_02620 0.38 -0.7 612,202 + OKGIIK_02620 0.38 +2.4 612,202 + OKGIIK_02620 0.38 +0.1 612,203 - OKGIIK_02620 0.38 +0.3 612,203 - OKGIIK_02620 0.38 -0.6 612,203 - OKGIIK_02620 0.38 -0.4 612,203 - OKGIIK_02620 0.38 -0.2 612,203 - OKGIIK_02620 0.38 -1.0 612,203 - OKGIIK_02620 0.38 +0.8 612,232 + OKGIIK_02620 0.40 +0.8 612,232 + OKGIIK_02620 0.40 -0.5 612,232 + OKGIIK_02620 0.40 +0.1 612,232 + OKGIIK_02620 0.40 -0.9 612,232 + OKGIIK_02620 0.40 -1.2 612,232 + OKGIIK_02620 0.40 +1.1 612,233 - OKGIIK_02620 0.40 -0.7 612,233 - OKGIIK_02620 0.40 -1.2 612,233 - OKGIIK_02620 0.40 -0.4 612,233 - OKGIIK_02620 0.40 +1.6 612,233 - OKGIIK_02620 0.40 +0.1 612,233 - OKGIIK_02620 0.40 -1.6 612,233 - OKGIIK_02620 0.40 +1.0 612,233 - OKGIIK_02620 0.40 -0.7 612,233 - OKGIIK_02620 0.40 +0.6 612,233 - OKGIIK_02620 0.40 +0.9 612,233 - OKGIIK_02620 0.40 -1.4 612,233 - OKGIIK_02620 0.40 -0.7 612,233 - OKGIIK_02620 0.40 -1.2 612,233 - OKGIIK_02620 0.40 -1.9 612,233 - OKGIIK_02620 0.40 -0.4 612,233 - OKGIIK_02620 0.40 -0.4 612,376 + OKGIIK_02620 0.51 -0.0 612,377 - OKGIIK_02620 0.51 +0.7 612,377 - OKGIIK_02620 0.51 -1.0 612,421 + OKGIIK_02620 0.55 -0.7 612,421 + OKGIIK_02620 0.55 +1.1 612,421 + OKGIIK_02620 0.55 +0.7 612,421 + OKGIIK_02620 0.55 +0.8 612,421 + OKGIIK_02620 0.55 +0.3 612,422 - OKGIIK_02620 0.55 -2.3 612,422 - OKGIIK_02620 0.55 -1.3 612,422 - OKGIIK_02620 0.55 -0.4 612,422 - OKGIIK_02620 0.55 +0.3 612,422 - OKGIIK_02620 0.55 +0.4 612,422 - OKGIIK_02620 0.55 +1.8 612,422 - OKGIIK_02620 0.55 +0.1 612,472 + OKGIIK_02620 0.59 +1.3 612,472 + OKGIIK_02620 0.59 -1.3 612,473 - OKGIIK_02620 0.59 +0.1 612,473 - OKGIIK_02620 0.59 -0.2 612,534 + OKGIIK_02620 0.63 +1.9 612,534 + OKGIIK_02620 0.63 -0.5 612,534 + OKGIIK_02620 0.63 -0.1 612,534 + OKGIIK_02620 0.63 +0.6 612,534 + OKGIIK_02620 0.63 +1.0 612,534 + OKGIIK_02620 0.63 -1.6 612,534 + OKGIIK_02620 0.63 +0.6 612,534 + OKGIIK_02620 0.63 -2.1 612,535 - OKGIIK_02620 0.63 -0.4 612,535 - OKGIIK_02620 0.63 -0.0 612,535 - OKGIIK_02620 0.63 +0.3 612,535 - OKGIIK_02620 0.63 +0.9 612,670 + OKGIIK_02620 0.74 -0.2 612,671 - OKGIIK_02620 0.74 -0.4 612,771 + OKGIIK_02620 0.82 +1.0 612,772 - OKGIIK_02620 0.82 -1.9 612,772 - OKGIIK_02620 0.82 -0.1 612,866 - OKGIIK_02620 0.89 +0.6 612,866 - OKGIIK_02620 0.89 -0.4 612,940 + -0.7 612,940 + -0.7 612,940 + -1.1 612,940 + +0.6 612,940 + -1.4 612,940 + -0.7 612,941 - +0.2 612,941 - -1.4 612,941 - +0.3 612,941 - +0.8 612,941 - -0.8 612,999 + -0.3 612,999 + -1.8 612,999 + +0.8 612,999 + +0.6 613,000 - +0.3 613,000 - -2.1 613,028 + -1.2 613,065 + -1.4 613,065 + -1.7 613,065 + -1.5 613,066 - -0.7 613,066 - +0.8 613,066 - -0.7 613,066 - +1.1 613,066 - -1.7 613,174 + OKGIIK_02625 0.13 -0.4 613,174 + OKGIIK_02625 0.13 -0.3 613,174 + OKGIIK_02625 0.13 -0.4 613,175 - OKGIIK_02625 0.13 +1.1 613,175 - OKGIIK_02625 0.13 -1.8 613,224 + OKGIIK_02625 0.24 +1.2 613,224 + OKGIIK_02625 0.24 -1.2 613,224 + OKGIIK_02625 0.24 -1.7 613,224 + OKGIIK_02625 0.24 +1.4 613,224 + OKGIIK_02625 0.24 -2.1 613,225 - OKGIIK_02625 0.24 -0.7 613,776 - flgM OKGIIK_02630 0.67 -3.0 613,913 - +1.3 613,913 - -1.4 613,913 - +0.3 613,945 + +0.1 613,945 + +0.6 613,945 + +0.4 613,945 + +1.0 613,945 + +0.6 613,946 - -0.7 613,946 - +0.1 613,946 - +0.1 613,960 + +0.9 613,960 + -2.2 613,960 + -2.0 613,960 + -0.0 613,960 + -1.2 613,960 + +0.6 613,960 + +0.6 613,960 + -2.0 613,960 + -0.6 613,960 + +0.8 613,960 + -0.6 613,960 + +0.8 613,960 + -0.3 613,960 + +1.6 613,960 + -1.4 613,960 + -0.0 613,960 + -1.4 613,960 + +0.9 613,960 + +0.4 613,960 + +0.1 613,960 + +0.4 613,961 - +0.6 613,961 - -0.3 613,961 - -0.7 613,961 - +1.8 613,961 - -1.1 613,961 - +1.0 613,961 - +1.6 613,961 - +0.6 613,961 - -0.0 613,961 - -0.4 613,961 - -1.2 613,961 - +0.5 613,961 - -0.5 613,961 - -0.5 613,961 - -0.0 613,961 - -1.0 613,961 - +0.8 613,962 + +0.6 613,962 + -0.2 613,962 + -1.1 613,963 - +0.6 613,963 - +1.2 613,963 - +0.1 614,269 + flgA OKGIIK_02635 0.39 -1.7 614,269 + flgA OKGIIK_02635 0.39 -0.4
Or see this region's nucleotide sequence