Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00990 and OKGIIK_00995 are separated by 66 nucleotides OKGIIK_00995 and OKGIIK_01000 overlap by 17 nucleotides OKGIIK_01000 and OKGIIK_01005 overlap by 4 nucleotides
OKGIIK_00990: OKGIIK_00990 - TonB-dependent copper receptor, at 215,955 to 218,099
_00990
OKGIIK_00995: OKGIIK_00995 - DUF2946 domain-containing protein, at 218,166 to 218,573
_00995
OKGIIK_01000: OKGIIK_01000 - hypothetical protein, at 218,557 to 218,829
_01000
OKGIIK_01005: OKGIIK_01005 - Prephenate dehydrogenase, at 218,826 to 219,590
_01005
Position (kb) 218
219 Strain fitness (log2 ratio) -2
-1
0
1 at 217.174 kb on + strand, within OKGIIK_00990 at 217.178 kb on - strand, within OKGIIK_00990 at 217.178 kb on - strand, within OKGIIK_00990 at 217.286 kb on - strand, within OKGIIK_00990 at 217.384 kb on + strand, within OKGIIK_00990 at 217.384 kb on + strand, within OKGIIK_00990 at 217.385 kb on - strand, within OKGIIK_00990 at 217.417 kb on + strand, within OKGIIK_00990 at 217.554 kb on - strand, within OKGIIK_00990 at 217.651 kb on + strand, within OKGIIK_00990 at 218.200 kb on - strand at 218.216 kb on - strand, within OKGIIK_00995 at 218.216 kb on - strand, within OKGIIK_00995 at 218.216 kb on - strand, within OKGIIK_00995 at 218.216 kb on - strand, within OKGIIK_00995 at 218.216 kb on - strand, within OKGIIK_00995 at 218.275 kb on - strand, within OKGIIK_00995 at 218.335 kb on + strand, within OKGIIK_00995 at 218.336 kb on - strand, within OKGIIK_00995 at 218.336 kb on - strand, within OKGIIK_00995 at 218.788 kb on + strand, within OKGIIK_01000
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 217,174 + OKGIIK_00990 0.57 -1.2 217,178 - OKGIIK_00990 0.57 -0.9 217,178 - OKGIIK_00990 0.57 -1.5 217,286 - OKGIIK_00990 0.62 -2.0 217,384 + OKGIIK_00990 0.67 -0.9 217,384 + OKGIIK_00990 0.67 -1.9 217,385 - OKGIIK_00990 0.67 -2.0 217,417 + OKGIIK_00990 0.68 -0.9 217,554 - OKGIIK_00990 0.75 +1.1 217,651 + OKGIIK_00990 0.79 -1.9 218,200 - +0.5 218,216 - OKGIIK_00995 0.12 +1.1 218,216 - OKGIIK_00995 0.12 -0.9 218,216 - OKGIIK_00995 0.12 -0.9 218,216 - OKGIIK_00995 0.12 -1.9 218,216 - OKGIIK_00995 0.12 -0.9 218,275 - OKGIIK_00995 0.27 -2.0 218,335 + OKGIIK_00995 0.41 -2.0 218,336 - OKGIIK_00995 0.42 -0.9 218,336 - OKGIIK_00995 0.42 -2.3 218,788 + OKGIIK_01000 0.85 +0.4
Or see this region's nucleotide sequence