Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06820

Experiment: NLN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06818 and MPMX19_06819 are separated by 157 nucleotidesMPMX19_06819 and MPMX19_06820 overlap by 4 nucleotidesMPMX19_06820 and MPMX19_06821 overlap by 8 nucleotidesMPMX19_06821 and MPMX19_06822 are separated by 2 nucleotides MPMX19_06818: MPMX19_06818 - Glycine betaine/proline betaine transport system ATP-binding protein ProV, at 83,720 to 84,916 _06818 MPMX19_06819: MPMX19_06819 - hypothetical protein, at 85,074 to 85,388 _06819 MPMX19_06820: MPMX19_06820 - hypothetical protein, at 85,385 to 85,783 _06820 MPMX19_06821: MPMX19_06821 - (E)-2-((N-methylformamido)methylene)succinate hydrolase, at 85,776 to 86,603 _06821 MPMX19_06822: MPMX19_06822 - Flavin-dependent trigonelline monooxygenase, oxygenase component, at 86,606 to 87,721 _06822 Position (kb) 85 86Strain fitness (log2 ratio) -2 -1 0 1 2at 84.435 kb on + strand, within MPMX19_06818at 84.435 kb on + strand, within MPMX19_06818at 84.436 kb on - strand, within MPMX19_06818at 84.745 kb on + strand, within MPMX19_06818at 84.745 kb on + strand, within MPMX19_06818at 84.746 kb on - strand, within MPMX19_06818at 84.746 kb on - strand, within MPMX19_06818at 84.746 kb on - strand, within MPMX19_06818at 84.746 kb on - strand, within MPMX19_06818at 84.746 kb on - strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.747 kb on + strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.748 kb on - strand, within MPMX19_06818at 84.791 kb on + strand, within MPMX19_06818at 84.959 kb on + strandat 84.982 kb on - strandat 85.220 kb on - strand, within MPMX19_06819at 85.271 kb on - strand, within MPMX19_06819at 85.271 kb on - strand, within MPMX19_06819at 85.271 kb on - strand, within MPMX19_06819at 85.336 kb on + strand, within MPMX19_06819at 85.336 kb on + strand, within MPMX19_06819at 85.336 kb on + strand, within MPMX19_06819at 85.336 kb on + strand, within MPMX19_06819at 85.336 kb on + strand, within MPMX19_06819at 85.366 kb on + strandat 85.366 kb on + strandat 85.366 kb on + strandat 85.366 kb on + strandat 85.367 kb on - strandat 85.367 kb on - strandat 85.367 kb on - strandat 85.367 kb on - strandat 85.476 kb on + strand, within MPMX19_06820at 85.476 kb on + strand, within MPMX19_06820at 85.476 kb on + strand, within MPMX19_06820at 85.477 kb on - strand, within MPMX19_06820at 85.477 kb on - strand, within MPMX19_06820at 85.477 kb on - strand, within MPMX19_06820at 85.477 kb on - strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.657 kb on - strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.723 kb on - strand, within MPMX19_06820at 85.723 kb on - strand, within MPMX19_06820at 85.723 kb on - strand, within MPMX19_06820at 86.051 kb on - strand, within MPMX19_06821at 86.086 kb on - strand, within MPMX19_06821at 86.086 kb on - strand, within MPMX19_06821at 86.086 kb on - strand, within MPMX19_06821at 86.155 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.501 kb on - strand, within MPMX19_06821at 86.557 kb on + strandat 86.557 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLN
remove
84,435 + MPMX19_06818 0.60 -0.6
84,435 + MPMX19_06818 0.60 +0.6
84,436 - MPMX19_06818 0.60 -0.6
84,745 + MPMX19_06818 0.86 +0.1
84,745 + MPMX19_06818 0.86 -0.6
84,746 - MPMX19_06818 0.86 +0.0
84,746 - MPMX19_06818 0.86 +2.5
84,746 - MPMX19_06818 0.86 +0.3
84,746 - MPMX19_06818 0.86 +1.2
84,746 - MPMX19_06818 0.86 +0.1
84,747 + MPMX19_06818 0.86 +0.8
84,747 + MPMX19_06818 0.86 +0.9
84,747 + MPMX19_06818 0.86 +0.4
84,747 + MPMX19_06818 0.86 +0.8
84,747 + MPMX19_06818 0.86 +0.5
84,747 + MPMX19_06818 0.86 -0.7
84,747 + MPMX19_06818 0.86 -0.2
84,747 + MPMX19_06818 0.86 +1.7
84,747 + MPMX19_06818 0.86 +1.5
84,747 + MPMX19_06818 0.86 -0.8
84,747 + MPMX19_06818 0.86 -0.4
84,747 + MPMX19_06818 0.86 +0.1
84,747 + MPMX19_06818 0.86 -1.8
84,747 + MPMX19_06818 0.86 +0.1
84,747 + MPMX19_06818 0.86 +0.8
84,747 + MPMX19_06818 0.86 +0.5
84,747 + MPMX19_06818 0.86 -0.6
84,747 + MPMX19_06818 0.86 +0.4
84,747 + MPMX19_06818 0.86 +1.5
84,747 + MPMX19_06818 0.86 +0.1
84,747 + MPMX19_06818 0.86 -2.1
84,747 + MPMX19_06818 0.86 +0.8
84,747 + MPMX19_06818 0.86 -0.8
84,747 + MPMX19_06818 0.86 -1.3
84,747 + MPMX19_06818 0.86 -0.1
84,747 + MPMX19_06818 0.86 +0.8
84,747 + MPMX19_06818 0.86 -1.1
84,748 - MPMX19_06818 0.86 +1.0
84,748 - MPMX19_06818 0.86 +0.1
84,748 - MPMX19_06818 0.86 -0.5
84,748 - MPMX19_06818 0.86 -0.5
84,748 - MPMX19_06818 0.86 -0.1
84,748 - MPMX19_06818 0.86 +0.1
84,748 - MPMX19_06818 0.86 -0.4
84,748 - MPMX19_06818 0.86 -0.3
84,748 - MPMX19_06818 0.86 -1.4
84,748 - MPMX19_06818 0.86 -1.5
84,748 - MPMX19_06818 0.86 +0.5
84,748 - MPMX19_06818 0.86 -0.7
84,748 - MPMX19_06818 0.86 -0.1
84,748 - MPMX19_06818 0.86 -0.1
84,748 - MPMX19_06818 0.86 +0.6
84,748 - MPMX19_06818 0.86 -1.1
84,748 - MPMX19_06818 0.86 +0.4
84,748 - MPMX19_06818 0.86 +1.5
84,748 - MPMX19_06818 0.86 -0.1
84,791 + MPMX19_06818 0.89 -1.1
84,959 + +0.6
84,982 - +0.8
85,220 - MPMX19_06819 0.46 -0.1
85,271 - MPMX19_06819 0.63 -0.1
85,271 - MPMX19_06819 0.63 -0.3
85,271 - MPMX19_06819 0.63 -0.4
85,336 + MPMX19_06819 0.83 -0.1
85,336 + MPMX19_06819 0.83 -0.8
85,336 + MPMX19_06819 0.83 -0.2
85,336 + MPMX19_06819 0.83 +1.5
85,336 + MPMX19_06819 0.83 -1.7
85,366 + +0.8
85,366 + +0.3
85,366 + +0.5
85,366 + -0.5
85,367 - +0.8
85,367 - -1.2
85,367 - +0.5
85,367 - -0.8
85,476 + MPMX19_06820 0.23 -0.3
85,476 + MPMX19_06820 0.23 +0.5
85,476 + MPMX19_06820 0.23 +0.7
85,477 - MPMX19_06820 0.23 +0.3
85,477 - MPMX19_06820 0.23 +0.3
85,477 - MPMX19_06820 0.23 +0.1
85,477 - MPMX19_06820 0.23 -1.1
85,656 + MPMX19_06820 0.68 -1.3
85,656 + MPMX19_06820 0.68 +0.7
85,656 + MPMX19_06820 0.68 -1.8
85,656 + MPMX19_06820 0.68 -1.0
85,656 + MPMX19_06820 0.68 -1.7
85,656 + MPMX19_06820 0.68 +0.0
85,657 - MPMX19_06820 0.68 -0.0
85,722 + MPMX19_06820 0.84 -0.2
85,722 + MPMX19_06820 0.84 -2.3
85,722 + MPMX19_06820 0.84 +1.3
85,722 + MPMX19_06820 0.84 -0.7
85,722 + MPMX19_06820 0.84 -0.9
85,723 - MPMX19_06820 0.85 -0.3
85,723 - MPMX19_06820 0.85 +1.2
85,723 - MPMX19_06820 0.85 +0.0
86,051 - MPMX19_06821 0.33 -0.9
86,086 - MPMX19_06821 0.37 -0.2
86,086 - MPMX19_06821 0.37 -0.8
86,086 - MPMX19_06821 0.37 +0.1
86,155 + MPMX19_06821 0.46 -1.5
86,500 + MPMX19_06821 0.87 -0.2
86,500 + MPMX19_06821 0.87 -0.1
86,500 + MPMX19_06821 0.87 +0.9
86,500 + MPMX19_06821 0.87 +1.8
86,501 - MPMX19_06821 0.88 -0.1
86,557 + -0.1
86,557 + +0.2

Or see this region's nucleotide sequence