Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06707

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06706 and MPMX19_06707 are separated by 62 nucleotidesMPMX19_06707 and MPMX19_06708 are separated by 291 nucleotidesMPMX19_06708 and MPMX19_06709 are separated by 124 nucleotides MPMX19_06706: MPMX19_06706 - hypothetical protein, at 276,619 to 277,863 _06706 MPMX19_06707: MPMX19_06707 - Sensor histidine kinase RcsC, at 277,926 to 279,608 _06707 MPMX19_06708: MPMX19_06708 - Translation initiation factor IF-3, at 279,900 to 280,364 _06708 MPMX19_06709: MPMX19_06709 - hypothetical protein, at 280,489 to 280,701 _06709 Position (kb) 277 278 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 277.160 kb on + strand, within MPMX19_06706at 277.160 kb on + strand, within MPMX19_06706at 277.161 kb on - strand, within MPMX19_06706at 277.161 kb on - strand, within MPMX19_06706at 277.161 kb on - strand, within MPMX19_06706at 277.161 kb on - strand, within MPMX19_06706at 277.190 kb on + strand, within MPMX19_06706at 277.217 kb on + strand, within MPMX19_06706at 277.217 kb on + strand, within MPMX19_06706at 277.217 kb on + strand, within MPMX19_06706at 277.217 kb on + strand, within MPMX19_06706at 277.218 kb on - strand, within MPMX19_06706at 277.218 kb on - strand, within MPMX19_06706at 277.218 kb on - strand, within MPMX19_06706at 277.218 kb on - strand, within MPMX19_06706at 277.218 kb on - strand, within MPMX19_06706at 277.218 kb on - strand, within MPMX19_06706at 277.218 kb on - strand, within MPMX19_06706at 277.218 kb on - strand, within MPMX19_06706at 277.259 kb on + strand, within MPMX19_06706at 277.259 kb on + strand, within MPMX19_06706at 277.259 kb on + strand, within MPMX19_06706at 277.259 kb on + strand, within MPMX19_06706at 277.259 kb on + strand, within MPMX19_06706at 277.260 kb on - strand, within MPMX19_06706at 277.260 kb on - strand, within MPMX19_06706at 277.260 kb on - strand, within MPMX19_06706at 277.260 kb on - strand, within MPMX19_06706at 277.265 kb on + strand, within MPMX19_06706at 277.265 kb on + strand, within MPMX19_06706at 277.265 kb on + strand, within MPMX19_06706at 277.265 kb on + strand, within MPMX19_06706at 277.266 kb on - strand, within MPMX19_06706at 277.266 kb on - strand, within MPMX19_06706at 277.266 kb on - strand, within MPMX19_06706at 277.266 kb on - strand, within MPMX19_06706at 277.266 kb on - strand, within MPMX19_06706at 277.266 kb on - strand, within MPMX19_06706at 277.266 kb on - strand, within MPMX19_06706at 277.664 kb on + strand, within MPMX19_06706at 277.664 kb on + strand, within MPMX19_06706at 277.664 kb on + strand, within MPMX19_06706at 277.664 kb on + strand, within MPMX19_06706at 277.664 kb on + strand, within MPMX19_06706at 277.664 kb on + strand, within MPMX19_06706at 277.664 kb on + strand, within MPMX19_06706at 277.665 kb on - strand, within MPMX19_06706at 277.665 kb on - strand, within MPMX19_06706at 277.665 kb on - strand, within MPMX19_06706at 277.665 kb on - strand, within MPMX19_06706at 277.879 kb on + strandat 277.879 kb on + strandat 277.879 kb on + strandat 277.879 kb on + strandat 277.879 kb on + strandat 277.880 kb on - strandat 277.880 kb on - strandat 277.880 kb on - strandat 277.880 kb on - strandat 277.880 kb on - strandat 277.880 kb on - strandat 277.880 kb on - strandat 277.880 kb on - strandat 277.880 kb on - strandat 277.880 kb on - strandat 277.880 kb on - strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.030 kb on + strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.031 kb on - strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.036 kb on + strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.037 kb on - strandat 278.095 kb on + strand, within MPMX19_06707at 278.096 kb on - strand, within MPMX19_06707at 278.096 kb on - strand, within MPMX19_06707at 278.096 kb on - strand, within MPMX19_06707at 278.128 kb on + strand, within MPMX19_06707at 278.129 kb on - strand, within MPMX19_06707at 278.129 kb on - strand, within MPMX19_06707at 278.299 kb on + strand, within MPMX19_06707at 278.299 kb on + strand, within MPMX19_06707at 278.299 kb on + strand, within MPMX19_06707at 278.299 kb on + strand, within MPMX19_06707at 278.299 kb on + strand, within MPMX19_06707at 278.299 kb on + strand, within MPMX19_06707at 278.299 kb on + strand, within MPMX19_06707at 278.299 kb on + strand, within MPMX19_06707at 278.299 kb on + strand, within MPMX19_06707at 278.300 kb on - strand, within MPMX19_06707at 278.300 kb on - strand, within MPMX19_06707at 278.300 kb on - strand, within MPMX19_06707at 278.300 kb on - strand, within MPMX19_06707at 278.300 kb on - strand, within MPMX19_06707at 278.300 kb on - strand, within MPMX19_06707at 278.300 kb on - strand, within MPMX19_06707at 278.300 kb on - strand, within MPMX19_06707at 278.542 kb on + strand, within MPMX19_06707at 278.542 kb on + strand, within MPMX19_06707at 278.542 kb on + strand, within MPMX19_06707at 278.543 kb on - strand, within MPMX19_06707at 278.543 kb on - strand, within MPMX19_06707at 278.543 kb on - strand, within MPMX19_06707at 278.543 kb on - strand, within MPMX19_06707at 278.543 kb on - strand, within MPMX19_06707at 278.543 kb on - strand, within MPMX19_06707at 278.543 kb on - strand, within MPMX19_06707at 278.668 kb on + strand, within MPMX19_06707at 278.668 kb on + strand, within MPMX19_06707at 278.668 kb on + strand, within MPMX19_06707at 278.668 kb on + strand, within MPMX19_06707at 278.668 kb on + strand, within MPMX19_06707at 278.668 kb on + strand, within MPMX19_06707at 278.668 kb on + strand, within MPMX19_06707at 278.669 kb on - strand, within MPMX19_06707at 278.669 kb on - strand, within MPMX19_06707at 278.669 kb on - strand, within MPMX19_06707at 278.669 kb on - strand, within MPMX19_06707at 278.669 kb on - strand, within MPMX19_06707at 278.669 kb on - strand, within MPMX19_06707at 278.669 kb on - strand, within MPMX19_06707at 278.669 kb on - strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.409 kb on + strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.410 kb on - strand, within MPMX19_06707at 279.451 kb on + strandat 279.451 kb on + strandat 279.451 kb on + strandat 279.451 kb on + strandat 279.451 kb on + strandat 279.451 kb on + strandat 279.451 kb on + strandat 279.452 kb on - strandat 279.452 kb on - strandat 279.452 kb on - strandat 279.452 kb on - strandat 279.452 kb on - strandat 279.452 kb on - strandat 279.452 kb on - strandat 279.452 kb on - strandat 279.452 kb on - strandat 279.452 kb on - strandat 279.452 kb on - strandat 279.523 kb on + strandat 279.523 kb on + strandat 279.523 kb on + strandat 279.523 kb on + strandat 279.523 kb on + strandat 279.523 kb on + strandat 279.523 kb on + strandat 279.523 kb on + strandat 279.524 kb on - strandat 279.524 kb on - strandat 279.524 kb on - strandat 279.524 kb on - strandat 279.524 kb on - strandat 279.608 kb on + strandat 279.608 kb on + strandat 279.608 kb on + strandat 279.608 kb on + strandat 279.608 kb on + strandat 279.608 kb on + strandat 279.608 kb on + strandat 279.609 kb on - strandat 279.609 kb on - strandat 279.609 kb on - strandat 279.609 kb on - strandat 279.609 kb on - strandat 279.609 kb on - strandat 279.687 kb on + strandat 279.687 kb on + strandat 279.712 kb on + strandat 279.712 kb on + strandat 279.713 kb on - strandat 279.745 kb on + strandat 279.746 kb on - strandat 279.746 kb on - strandat 279.804 kb on + strandat 279.804 kb on + strandat 279.804 kb on + strandat 279.805 kb on - strandat 279.805 kb on - strandat 280.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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277,160 + MPMX19_06706 0.43 -2.2
277,160 + MPMX19_06706 0.43 -0.6
277,161 - MPMX19_06706 0.44 -0.1
277,161 - MPMX19_06706 0.44 +0.5
277,161 - MPMX19_06706 0.44 -0.9
277,161 - MPMX19_06706 0.44 -0.2
277,190 + MPMX19_06706 0.46 +0.4
277,217 + MPMX19_06706 0.48 -1.0
277,217 + MPMX19_06706 0.48 -1.3
277,217 + MPMX19_06706 0.48 -1.7
277,217 + MPMX19_06706 0.48 -1.4
277,218 - MPMX19_06706 0.48 +0.3
277,218 - MPMX19_06706 0.48 -2.8
277,218 - MPMX19_06706 0.48 -0.8
277,218 - MPMX19_06706 0.48 +0.0
277,218 - MPMX19_06706 0.48 +0.0
277,218 - MPMX19_06706 0.48 -1.1
277,218 - MPMX19_06706 0.48 -0.4
277,218 - MPMX19_06706 0.48 -0.4
277,259 + MPMX19_06706 0.51 +0.4
277,259 + MPMX19_06706 0.51 +0.4
277,259 + MPMX19_06706 0.51 +0.7
277,259 + MPMX19_06706 0.51 -1.1
277,259 + MPMX19_06706 0.51 -0.1
277,260 - MPMX19_06706 0.51 -1.2
277,260 - MPMX19_06706 0.51 +1.0
277,260 - MPMX19_06706 0.51 +0.3
277,260 - MPMX19_06706 0.51 -0.1
277,265 + MPMX19_06706 0.52 +0.2
277,265 + MPMX19_06706 0.52 +0.0
277,265 + MPMX19_06706 0.52 -2.0
277,265 + MPMX19_06706 0.52 -0.7
277,266 - MPMX19_06706 0.52 -1.1
277,266 - MPMX19_06706 0.52 -0.3
277,266 - MPMX19_06706 0.52 -0.8
277,266 - MPMX19_06706 0.52 -1.2
277,266 - MPMX19_06706 0.52 -0.7
277,266 - MPMX19_06706 0.52 -0.5
277,266 - MPMX19_06706 0.52 -0.6
277,664 + MPMX19_06706 0.84 -0.8
277,664 + MPMX19_06706 0.84 +2.4
277,664 + MPMX19_06706 0.84 +0.2
277,664 + MPMX19_06706 0.84 +0.6
277,664 + MPMX19_06706 0.84 +0.4
277,664 + MPMX19_06706 0.84 +0.2
277,664 + MPMX19_06706 0.84 +0.4
277,665 - MPMX19_06706 0.84 +0.2
277,665 - MPMX19_06706 0.84 -2.0
277,665 - MPMX19_06706 0.84 +0.2
277,665 - MPMX19_06706 0.84 -0.2
277,879 + +0.9
277,879 + -1.2
277,879 + -2.3
277,879 + -0.4
277,879 + -0.3
277,880 - +0.9
277,880 - -0.1
277,880 - -0.9
277,880 - -0.9
277,880 - +0.2
277,880 - +0.2
277,880 - +0.4
277,880 - +0.2
277,880 - -0.0
277,880 - -0.8
277,880 - -2.2
278,030 + -0.5
278,030 + -0.0
278,030 + -1.8
278,030 + -0.1
278,030 + +0.4
278,030 + +0.3
278,030 + -0.4
278,030 + +0.3
278,030 + -0.5
278,030 + +0.5
278,030 + -1.0
278,030 + +0.8
278,030 + +0.3
278,030 + -1.2
278,030 + +0.0
278,030 + -0.8
278,030 + -1.4
278,030 + -2.0
278,031 - +1.0
278,031 - -1.0
278,031 - +0.4
278,031 - +0.0
278,031 - -2.4
278,031 - +0.0
278,031 - +1.0
278,031 - +0.3
278,031 - +0.4
278,031 - +0.3
278,031 - -0.7
278,031 - -0.6
278,031 - -1.1
278,031 - +0.0
278,031 - -2.0
278,031 - -0.1
278,031 - -1.5
278,031 - -0.3
278,036 + +0.0
278,036 + +0.6
278,036 + -2.6
278,036 + +0.3
278,036 + -0.6
278,036 + -1.2
278,036 + +0.1
278,036 + -0.0
278,036 + -0.9
278,036 + -1.2
278,036 + +0.9
278,036 + +0.6
278,037 - -1.6
278,037 - -1.6
278,037 - -0.1
278,037 - -0.2
278,037 - -0.0
278,037 - +0.2
278,037 - +0.2
278,037 - -0.3
278,037 - -0.4
278,037 - -1.0
278,037 - +1.4
278,037 - -0.7
278,037 - -0.4
278,037 - +0.0
278,037 - +0.1
278,037 - -0.3
278,037 - +1.3
278,037 - -0.2
278,037 - -0.6
278,037 - +0.0
278,037 - -0.2
278,037 - -2.0
278,037 - -1.6
278,037 - -0.4
278,095 + MPMX19_06707 0.10 +0.6
278,096 - MPMX19_06707 0.10 -2.3
278,096 - MPMX19_06707 0.10 -0.2
278,096 - MPMX19_06707 0.10 -1.2
278,128 + MPMX19_06707 0.12 +1.0
278,129 - MPMX19_06707 0.12 -0.5
278,129 - MPMX19_06707 0.12 -1.0
278,299 + MPMX19_06707 0.22 +1.4
278,299 + MPMX19_06707 0.22 -0.7
278,299 + MPMX19_06707 0.22 +1.0
278,299 + MPMX19_06707 0.22 +0.4
278,299 + MPMX19_06707 0.22 -0.4
278,299 + MPMX19_06707 0.22 +1.9
278,299 + MPMX19_06707 0.22 +0.7
278,299 + MPMX19_06707 0.22 +0.6
278,299 + MPMX19_06707 0.22 -0.1
278,300 - MPMX19_06707 0.22 -0.3
278,300 - MPMX19_06707 0.22 -0.1
278,300 - MPMX19_06707 0.22 +0.0
278,300 - MPMX19_06707 0.22 +0.6
278,300 - MPMX19_06707 0.22 +1.4
278,300 - MPMX19_06707 0.22 -1.2
278,300 - MPMX19_06707 0.22 +0.1
278,300 - MPMX19_06707 0.22 +0.0
278,542 + MPMX19_06707 0.37 -1.0
278,542 + MPMX19_06707 0.37 -0.2
278,542 + MPMX19_06707 0.37 -0.5
278,543 - MPMX19_06707 0.37 +0.9
278,543 - MPMX19_06707 0.37 -0.8
278,543 - MPMX19_06707 0.37 -0.1
278,543 - MPMX19_06707 0.37 -0.2
278,543 - MPMX19_06707 0.37 +0.2
278,543 - MPMX19_06707 0.37 -0.5
278,543 - MPMX19_06707 0.37 +1.2
278,668 + MPMX19_06707 0.44 +0.3
278,668 + MPMX19_06707 0.44 +1.0
278,668 + MPMX19_06707 0.44 +0.5
278,668 + MPMX19_06707 0.44 -0.6
278,668 + MPMX19_06707 0.44 +0.4
278,668 + MPMX19_06707 0.44 -1.1
278,668 + MPMX19_06707 0.44 +0.4
278,669 - MPMX19_06707 0.44 -0.2
278,669 - MPMX19_06707 0.44 -0.1
278,669 - MPMX19_06707 0.44 +0.9
278,669 - MPMX19_06707 0.44 +0.4
278,669 - MPMX19_06707 0.44 -1.6
278,669 - MPMX19_06707 0.44 -1.0
278,669 - MPMX19_06707 0.44 -0.0
278,669 - MPMX19_06707 0.44 +0.2
279,409 + MPMX19_06707 0.88 +0.0
279,409 + MPMX19_06707 0.88 -0.3
279,409 + MPMX19_06707 0.88 -0.8
279,409 + MPMX19_06707 0.88 -0.4
279,409 + MPMX19_06707 0.88 -0.1
279,409 + MPMX19_06707 0.88 -0.7
279,409 + MPMX19_06707 0.88 +0.0
279,409 + MPMX19_06707 0.88 +0.6
279,409 + MPMX19_06707 0.88 +0.6
279,409 + MPMX19_06707 0.88 -0.1
279,409 + MPMX19_06707 0.88 -0.7
279,409 + MPMX19_06707 0.88 +0.5
279,409 + MPMX19_06707 0.88 -0.1
279,410 - MPMX19_06707 0.88 -0.1
279,410 - MPMX19_06707 0.88 +1.4
279,410 - MPMX19_06707 0.88 +1.2
279,410 - MPMX19_06707 0.88 -0.2
279,410 - MPMX19_06707 0.88 -1.2
279,410 - MPMX19_06707 0.88 +0.6
279,410 - MPMX19_06707 0.88 +0.0
279,410 - MPMX19_06707 0.88 +0.2
279,410 - MPMX19_06707 0.88 +0.0
279,410 - MPMX19_06707 0.88 -0.3
279,410 - MPMX19_06707 0.88 +0.4
279,410 - MPMX19_06707 0.88 +0.2
279,410 - MPMX19_06707 0.88 -1.4
279,410 - MPMX19_06707 0.88 -0.2
279,451 + -1.4
279,451 + -0.3
279,451 + -1.8
279,451 + -0.3
279,451 + -1.1
279,451 + -0.5
279,451 + +0.9
279,452 - -0.6
279,452 - -0.3
279,452 - +0.1
279,452 - -0.6
279,452 - -2.2
279,452 - -0.9
279,452 - +0.3
279,452 - +0.6
279,452 - -1.0
279,452 - +0.4
279,452 - +0.5
279,523 + -0.0
279,523 + -1.6
279,523 + +0.2
279,523 + -1.6
279,523 + +0.6
279,523 + -0.1
279,523 + -1.4
279,523 + -0.6
279,524 - +0.0
279,524 - +0.3
279,524 - -1.3
279,524 - -1.3
279,524 - -1.1
279,608 + -1.7
279,608 + +0.4
279,608 + -0.4
279,608 + +0.8
279,608 + -0.7
279,608 + +0.3
279,608 + +0.8
279,609 - +0.3
279,609 - +0.4
279,609 - -0.9
279,609 - -0.1
279,609 - +0.0
279,609 - -0.3
279,687 + +1.0
279,687 + +0.5
279,712 + -1.2
279,712 + +0.4
279,713 - -0.1
279,745 + -0.7
279,746 - +0.6
279,746 - +0.8
279,804 + +0.3
279,804 + -0.4
279,804 + +0.4
279,805 - -0.3
279,805 - +0.0
280,485 - +0.9

Or see this region's nucleotide sequence