Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05194

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05193 and MPMX19_05194 are separated by 41 nucleotidesMPMX19_05194 and MPMX19_05195 overlap by 4 nucleotidesMPMX19_05195 and MPMX19_05196 are separated by 57 nucleotides MPMX19_05193: MPMX19_05193 - Taurine-binding periplasmic protein, at 696,163 to 697,179 _05193 MPMX19_05194: MPMX19_05194 - Taurine import ATP-binding protein TauB, at 697,221 to 698,024 _05194 MPMX19_05195: MPMX19_05195 - Putative aliphatic sulfonates transport permease protein SsuC, at 698,021 to 698,872 _05195 MPMX19_05196: MPMX19_05196 - Alpha-ketoglutarate-dependent taurine dioxygenase, at 698,930 to 699,781 _05196 Position (kb) 697 698 699Strain fitness (log2 ratio) -2 -1 0 1 2at 696.592 kb on + strand, within MPMX19_05193at 696.592 kb on + strand, within MPMX19_05193at 696.880 kb on + strand, within MPMX19_05193at 696.881 kb on - strand, within MPMX19_05193at 696.881 kb on - strand, within MPMX19_05193at 697.084 kb on - strandat 697.159 kb on + strandat 697.159 kb on + strandat 697.159 kb on + strandat 697.159 kb on + strandat 697.159 kb on + strandat 697.177 kb on + strandat 697.953 kb on + strandat 697.953 kb on + strandat 697.953 kb on + strandat 697.953 kb on + strandat 697.953 kb on + strandat 697.953 kb on + strandat 697.954 kb on - strandat 697.954 kb on - strandat 697.954 kb on - strandat 697.954 kb on - strandat 698.259 kb on - strand, within MPMX19_05195at 698.259 kb on - strand, within MPMX19_05195at 698.259 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.436 kb on - strand, within MPMX19_05195at 698.907 kb on + strandat 698.908 kb on - strandat 698.908 kb on - strandat 698.908 kb on - strandat 698.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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696,592 + MPMX19_05193 0.42 -1.0
696,592 + MPMX19_05193 0.42 +0.2
696,880 + MPMX19_05193 0.71 +1.2
696,881 - MPMX19_05193 0.71 +0.1
696,881 - MPMX19_05193 0.71 -0.8
697,084 - -2.0
697,159 + +0.1
697,159 + -0.1
697,159 + -0.1
697,159 + -0.8
697,159 + -1.6
697,177 + +0.2
697,953 + +0.1
697,953 + -1.8
697,953 + +0.8
697,953 + -1.0
697,953 + -1.1
697,953 + -0.9
697,954 - -0.1
697,954 - -0.0
697,954 - +0.1
697,954 - -0.1
698,259 - MPMX19_05195 0.28 +2.0
698,259 - MPMX19_05195 0.28 -0.9
698,259 - MPMX19_05195 0.28 +0.8
698,436 - MPMX19_05195 0.49 +0.0
698,436 - MPMX19_05195 0.49 -0.4
698,436 - MPMX19_05195 0.49 +1.0
698,436 - MPMX19_05195 0.49 +0.7
698,436 - MPMX19_05195 0.49 +0.8
698,436 - MPMX19_05195 0.49 -0.9
698,436 - MPMX19_05195 0.49 +0.2
698,436 - MPMX19_05195 0.49 +0.6
698,907 + -0.4
698,908 - -0.2
698,908 - -0.3
698,908 - -0.6
698,908 - -1.6

Or see this region's nucleotide sequence