Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05127

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05126 and MPMX19_05127 are separated by 4 nucleotidesMPMX19_05127 and MPMX19_05128 are separated by 158 nucleotidesMPMX19_05128 and MPMX19_05129 overlap by 4 nucleotidesMPMX19_05129 and MPMX19_05130 are separated by 45 nucleotides MPMX19_05126: MPMX19_05126 - Tyrosine recombinase XerC, at 614,162 to 615,247 _05126 MPMX19_05127: MPMX19_05127 - hypothetical protein, at 615,252 to 616,976 _05127 MPMX19_05128: MPMX19_05128 - hypothetical protein, at 617,135 to 617,311 _05128 MPMX19_05129: MPMX19_05129 - hypothetical protein, at 617,308 to 617,472 _05129 MPMX19_05130: MPMX19_05130 - hypothetical protein, at 617,518 to 618,300 _05130 Position (kb) 615 616 617Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 614.262 kb on + strandat 614.262 kb on + strandat 614.262 kb on + strandat 614.262 kb on + strandat 614.263 kb on - strandat 614.523 kb on + strand, within MPMX19_05126at 614.523 kb on + strand, within MPMX19_05126at 614.523 kb on + strand, within MPMX19_05126at 614.523 kb on + strand, within MPMX19_05126at 614.523 kb on + strand, within MPMX19_05126at 614.524 kb on - strand, within MPMX19_05126at 614.524 kb on - strand, within MPMX19_05126at 614.524 kb on - strand, within MPMX19_05126at 614.524 kb on - strand, within MPMX19_05126at 614.524 kb on - strand, within MPMX19_05126at 614.524 kb on - strand, within MPMX19_05126at 614.524 kb on - strand, within MPMX19_05126at 614.580 kb on + strand, within MPMX19_05126at 614.580 kb on + strand, within MPMX19_05126at 614.580 kb on + strand, within MPMX19_05126at 614.580 kb on + strand, within MPMX19_05126at 614.581 kb on - strand, within MPMX19_05126at 614.793 kb on + strand, within MPMX19_05126at 614.793 kb on + strand, within MPMX19_05126at 614.794 kb on - strand, within MPMX19_05126at 614.986 kb on - strand, within MPMX19_05126at 614.986 kb on - strand, within MPMX19_05126at 614.986 kb on - strand, within MPMX19_05126at 614.986 kb on - strand, within MPMX19_05126at 614.986 kb on - strand, within MPMX19_05126at 614.993 kb on + strand, within MPMX19_05126at 614.993 kb on + strand, within MPMX19_05126at 614.993 kb on + strand, within MPMX19_05126at 614.993 kb on + strand, within MPMX19_05126at 614.994 kb on - strand, within MPMX19_05126at 614.994 kb on - strand, within MPMX19_05126at 614.994 kb on - strand, within MPMX19_05126at 614.994 kb on - strand, within MPMX19_05126at 614.994 kb on - strand, within MPMX19_05126at 615.078 kb on + strand, within MPMX19_05126at 615.078 kb on + strand, within MPMX19_05126at 615.078 kb on + strand, within MPMX19_05126at 615.078 kb on + strand, within MPMX19_05126at 615.078 kb on + strand, within MPMX19_05126at 615.078 kb on + strand, within MPMX19_05126at 615.078 kb on + strand, within MPMX19_05126at 615.079 kb on - strand, within MPMX19_05126at 615.079 kb on - strand, within MPMX19_05126at 615.311 kb on - strandat 615.346 kb on + strandat 615.346 kb on + strandat 615.346 kb on + strandat 615.346 kb on + strandat 615.346 kb on + strandat 615.346 kb on + strandat 615.347 kb on - strandat 615.347 kb on - strandat 615.347 kb on - strandat 615.347 kb on - strandat 615.347 kb on - strandat 615.347 kb on - strandat 615.347 kb on - strandat 615.347 kb on - strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.349 kb on + strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.350 kb on - strandat 615.403 kb on + strandat 615.403 kb on + strandat 615.404 kb on - strandat 615.404 kb on - strandat 615.404 kb on - strandat 615.592 kb on + strand, within MPMX19_05127at 616.351 kb on + strand, within MPMX19_05127at 616.352 kb on - strand, within MPMX19_05127at 616.352 kb on - strand, within MPMX19_05127at 616.352 kb on - strand, within MPMX19_05127at 616.352 kb on - strand, within MPMX19_05127at 616.352 kb on - strand, within MPMX19_05127at 616.508 kb on + strand, within MPMX19_05127at 616.612 kb on + strand, within MPMX19_05127at 616.612 kb on + strand, within MPMX19_05127at 616.613 kb on - strand, within MPMX19_05127at 616.613 kb on - strand, within MPMX19_05127at 616.613 kb on - strand, within MPMX19_05127at 616.613 kb on - strand, within MPMX19_05127at 616.667 kb on - strand, within MPMX19_05127at 616.922 kb on + strandat 616.922 kb on + strandat 616.922 kb on + strandat 616.923 kb on - strandat 616.923 kb on - strandat 616.923 kb on - strandat 617.029 kb on - strandat 617.029 kb on - strandat 617.081 kb on - strandat 617.354 kb on + strand, within MPMX19_05129at 617.355 kb on - strand, within MPMX19_05129at 617.355 kb on - strand, within MPMX19_05129at 617.355 kb on - strand, within MPMX19_05129at 617.612 kb on + strand, within MPMX19_05130at 617.613 kb on - strand, within MPMX19_05130at 617.613 kb on - strand, within MPMX19_05130at 617.613 kb on - strand, within MPMX19_05130at 617.613 kb on - strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.720 kb on + strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.721 kb on - strand, within MPMX19_05130at 617.842 kb on + strand, within MPMX19_05130at 617.843 kb on - strand, within MPMX19_05130at 617.843 kb on - strand, within MPMX19_05130at 617.843 kb on - strand, within MPMX19_05130at 617.843 kb on - strand, within MPMX19_05130

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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614,262 + -0.4
614,262 + -0.5
614,262 + -0.5
614,262 + +0.2
614,263 - -0.1
614,523 + MPMX19_05126 0.33 +0.4
614,523 + MPMX19_05126 0.33 -0.5
614,523 + MPMX19_05126 0.33 -0.6
614,523 + MPMX19_05126 0.33 +1.5
614,523 + MPMX19_05126 0.33 -0.2
614,524 - MPMX19_05126 0.33 -0.5
614,524 - MPMX19_05126 0.33 +0.0
614,524 - MPMX19_05126 0.33 -0.7
614,524 - MPMX19_05126 0.33 -0.1
614,524 - MPMX19_05126 0.33 -0.1
614,524 - MPMX19_05126 0.33 -0.8
614,524 - MPMX19_05126 0.33 +1.8
614,580 + MPMX19_05126 0.38 +0.4
614,580 + MPMX19_05126 0.38 -1.5
614,580 + MPMX19_05126 0.38 -0.1
614,580 + MPMX19_05126 0.38 -0.8
614,581 - MPMX19_05126 0.39 +0.2
614,793 + MPMX19_05126 0.58 -1.5
614,793 + MPMX19_05126 0.58 -0.6
614,794 - MPMX19_05126 0.58 -0.4
614,986 - MPMX19_05126 0.76 -1.3
614,986 - MPMX19_05126 0.76 +0.5
614,986 - MPMX19_05126 0.76 -1.4
614,986 - MPMX19_05126 0.76 +0.1
614,986 - MPMX19_05126 0.76 +1.3
614,993 + MPMX19_05126 0.77 -0.5
614,993 + MPMX19_05126 0.77 -1.5
614,993 + MPMX19_05126 0.77 -0.6
614,993 + MPMX19_05126 0.77 +0.4
614,994 - MPMX19_05126 0.77 -0.5
614,994 - MPMX19_05126 0.77 +1.1
614,994 - MPMX19_05126 0.77 +0.2
614,994 - MPMX19_05126 0.77 +1.2
614,994 - MPMX19_05126 0.77 -1.4
615,078 + MPMX19_05126 0.84 -0.1
615,078 + MPMX19_05126 0.84 +0.1
615,078 + MPMX19_05126 0.84 -0.5
615,078 + MPMX19_05126 0.84 -0.1
615,078 + MPMX19_05126 0.84 +0.4
615,078 + MPMX19_05126 0.84 -0.8
615,078 + MPMX19_05126 0.84 -1.8
615,079 - MPMX19_05126 0.84 +0.5
615,079 - MPMX19_05126 0.84 -0.6
615,311 - +0.5
615,346 + -0.6
615,346 + +0.1
615,346 + +1.3
615,346 + -0.1
615,346 + -1.3
615,346 + +0.5
615,347 - -0.2
615,347 - +0.9
615,347 - +1.4
615,347 - -0.5
615,347 - -0.2
615,347 - -0.2
615,347 - -0.3
615,347 - -0.2
615,349 + +0.7
615,349 + +1.2
615,349 + -0.4
615,349 + -0.3
615,349 + +0.2
615,349 + -0.5
615,349 + -0.1
615,349 + +2.1
615,349 + +1.5
615,349 + -0.5
615,349 + -1.3
615,349 + +0.7
615,349 + +0.4
615,349 + -1.2
615,349 + -0.6
615,349 + +0.8
615,349 + +0.0
615,349 + -0.1
615,350 - -0.3
615,350 - +0.2
615,350 - +1.0
615,350 - -0.4
615,350 - +0.3
615,350 - +0.1
615,350 - +0.1
615,350 - +0.5
615,350 - +0.6
615,350 - +0.2
615,350 - +0.1
615,350 - +0.9
615,350 - -0.5
615,350 - -3.0
615,403 + +0.7
615,403 + -0.1
615,404 - -0.3
615,404 - -0.4
615,404 - -0.7
615,592 + MPMX19_05127 0.20 -1.4
616,351 + MPMX19_05127 0.64 -0.1
616,352 - MPMX19_05127 0.64 -0.6
616,352 - MPMX19_05127 0.64 -1.1
616,352 - MPMX19_05127 0.64 -1.0
616,352 - MPMX19_05127 0.64 +1.3
616,352 - MPMX19_05127 0.64 -0.7
616,508 + MPMX19_05127 0.73 -0.3
616,612 + MPMX19_05127 0.79 +0.5
616,612 + MPMX19_05127 0.79 -0.3
616,613 - MPMX19_05127 0.79 -0.5
616,613 - MPMX19_05127 0.79 -0.7
616,613 - MPMX19_05127 0.79 +0.4
616,613 - MPMX19_05127 0.79 -2.1
616,667 - MPMX19_05127 0.82 -1.3
616,922 + -1.4
616,922 + +0.1
616,922 + +2.5
616,923 - -0.9
616,923 - -0.1
616,923 - +0.4
617,029 - -1.1
617,029 - +0.2
617,081 - +0.4
617,354 + MPMX19_05129 0.28 -0.5
617,355 - MPMX19_05129 0.28 -0.8
617,355 - MPMX19_05129 0.28 -0.2
617,355 - MPMX19_05129 0.28 -0.3
617,612 + MPMX19_05130 0.12 -0.2
617,613 - MPMX19_05130 0.12 +0.7
617,613 - MPMX19_05130 0.12 -0.2
617,613 - MPMX19_05130 0.12 +0.2
617,613 - MPMX19_05130 0.12 +0.7
617,720 + MPMX19_05130 0.26 -0.1
617,720 + MPMX19_05130 0.26 +0.1
617,720 + MPMX19_05130 0.26 +0.9
617,720 + MPMX19_05130 0.26 +1.5
617,720 + MPMX19_05130 0.26 +0.1
617,720 + MPMX19_05130 0.26 +0.1
617,720 + MPMX19_05130 0.26 -0.5
617,721 - MPMX19_05130 0.26 -0.1
617,721 - MPMX19_05130 0.26 -0.1
617,721 - MPMX19_05130 0.26 -1.3
617,721 - MPMX19_05130 0.26 -0.3
617,721 - MPMX19_05130 0.26 -0.2
617,721 - MPMX19_05130 0.26 +0.6
617,721 - MPMX19_05130 0.26 -0.3
617,842 + MPMX19_05130 0.41 +0.5
617,843 - MPMX19_05130 0.42 +0.3
617,843 - MPMX19_05130 0.42 -0.5
617,843 - MPMX19_05130 0.42 +0.0
617,843 - MPMX19_05130 0.42 +0.5

Or see this region's nucleotide sequence