Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04979

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04978 and MPMX19_04979 overlap by 4 nucleotidesMPMX19_04979 and MPMX19_04980 overlap by 4 nucleotides MPMX19_04978: MPMX19_04978 - hypothetical protein, at 448,967 to 451,549 _04978 MPMX19_04979: MPMX19_04979 - Minor endoglucanase Y, at 451,546 to 452,616 _04979 MPMX19_04980: MPMX19_04980 - hypothetical protein, at 452,613 to 454,451 _04980 Position (kb) 451 452 453Strain fitness (log2 ratio) -2 -1 0 1 2at 450.674 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.675 kb on - strand, within MPMX19_04978at 450.675 kb on - strand, within MPMX19_04978at 451.103 kb on + strand, within MPMX19_04978at 451.103 kb on + strand, within MPMX19_04978at 451.103 kb on + strand, within MPMX19_04978at 451.103 kb on + strand, within MPMX19_04978at 451.103 kb on + strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.196 kb on + strand, within MPMX19_04978at 451.197 kb on - strand, within MPMX19_04978at 451.376 kb on + strandat 451.377 kb on - strandat 451.657 kb on + strand, within MPMX19_04979at 451.657 kb on + strand, within MPMX19_04979at 451.657 kb on + strand, within MPMX19_04979at 451.658 kb on - strand, within MPMX19_04979at 451.658 kb on - strand, within MPMX19_04979at 451.658 kb on - strand, within MPMX19_04979at 451.762 kb on + strand, within MPMX19_04979at 451.978 kb on + strand, within MPMX19_04979at 451.979 kb on - strand, within MPMX19_04979at 451.979 kb on - strand, within MPMX19_04979at 451.979 kb on - strand, within MPMX19_04979at 452.110 kb on + strand, within MPMX19_04979at 452.111 kb on - strand, within MPMX19_04979at 452.111 kb on - strand, within MPMX19_04979at 452.111 kb on - strand, within MPMX19_04979at 452.296 kb on + strand, within MPMX19_04979at 452.296 kb on + strand, within MPMX19_04979at 452.296 kb on + strand, within MPMX19_04979at 452.296 kb on + strand, within MPMX19_04979at 452.296 kb on + strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.302 kb on + strand, within MPMX19_04979at 452.302 kb on + strand, within MPMX19_04979at 452.303 kb on - strand, within MPMX19_04979at 452.303 kb on - strand, within MPMX19_04979at 452.303 kb on - strand, within MPMX19_04979at 452.303 kb on - strand, within MPMX19_04979at 452.326 kb on + strand, within MPMX19_04979at 452.326 kb on + strand, within MPMX19_04979at 452.326 kb on + strand, within MPMX19_04979at 452.326 kb on + strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.356 kb on + strand, within MPMX19_04979at 452.356 kb on + strand, within MPMX19_04979at 452.357 kb on - strand, within MPMX19_04979at 452.357 kb on - strand, within MPMX19_04979at 452.357 kb on - strand, within MPMX19_04979at 452.359 kb on + strand, within MPMX19_04979at 452.359 kb on + strand, within MPMX19_04979at 452.359 kb on + strand, within MPMX19_04979at 452.359 kb on + strand, within MPMX19_04979at 452.359 kb on + strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.551 kb on + strandat 452.551 kb on + strandat 452.551 kb on + strandat 452.551 kb on + strandat 452.551 kb on + strandat 452.551 kb on + strandat 452.551 kb on + strandat 452.551 kb on + strandat 452.552 kb on - strandat 452.554 kb on + strandat 452.554 kb on + strandat 452.554 kb on + strandat 452.554 kb on + strandat 452.554 kb on + strandat 452.554 kb on + strandat 452.554 kb on + strandat 452.554 kb on + strandat 452.554 kb on + strandat 452.554 kb on + strandat 452.555 kb on - strandat 452.555 kb on - strandat 452.555 kb on - strandat 452.555 kb on - strandat 452.555 kb on - strandat 452.555 kb on - strandat 452.555 kb on - strandat 452.802 kb on + strand, within MPMX19_04980at 452.802 kb on + strand, within MPMX19_04980at 452.802 kb on + strand, within MPMX19_04980at 452.803 kb on - strand, within MPMX19_04980at 452.803 kb on - strand, within MPMX19_04980at 452.803 kb on - strand, within MPMX19_04980at 452.805 kb on + strand, within MPMX19_04980at 452.805 kb on + strand, within MPMX19_04980at 452.806 kb on - strand, within MPMX19_04980at 452.806 kb on - strand, within MPMX19_04980at 452.806 kb on - strand, within MPMX19_04980at 452.806 kb on - strand, within MPMX19_04980at 452.806 kb on - strand, within MPMX19_04980at 452.806 kb on - strand, within MPMX19_04980at 453.186 kb on + strand, within MPMX19_04980at 453.186 kb on + strand, within MPMX19_04980at 453.186 kb on + strand, within MPMX19_04980at 453.187 kb on - strand, within MPMX19_04980at 453.187 kb on - strand, within MPMX19_04980at 453.187 kb on - strand, within MPMX19_04980at 453.187 kb on - strand, within MPMX19_04980at 453.187 kb on - strand, within MPMX19_04980at 453.187 kb on - strand, within MPMX19_04980at 453.187 kb on - strand, within MPMX19_04980at 453.187 kb on - strand, within MPMX19_04980at 453.187 kb on - strand, within MPMX19_04980at 453.225 kb on + strand, within MPMX19_04980at 453.225 kb on + strand, within MPMX19_04980at 453.225 kb on + strand, within MPMX19_04980at 453.225 kb on + strand, within MPMX19_04980at 453.225 kb on + strand, within MPMX19_04980at 453.225 kb on + strand, within MPMX19_04980at 453.225 kb on + strand, within MPMX19_04980at 453.225 kb on + strand, within MPMX19_04980at 453.225 kb on + strand, within MPMX19_04980at 453.225 kb on + strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.226 kb on - strand, within MPMX19_04980at 453.300 kb on - strand, within MPMX19_04980at 453.300 kb on - strand, within MPMX19_04980at 453.300 kb on - strand, within MPMX19_04980at 453.300 kb on - strand, within MPMX19_04980at 453.366 kb on + strand, within MPMX19_04980at 453.366 kb on + strand, within MPMX19_04980at 453.366 kb on + strand, within MPMX19_04980at 453.367 kb on - strand, within MPMX19_04980at 453.367 kb on - strand, within MPMX19_04980at 453.367 kb on - strand, within MPMX19_04980at 453.528 kb on + strand, within MPMX19_04980at 453.528 kb on + strand, within MPMX19_04980at 453.528 kb on + strand, within MPMX19_04980at 453.528 kb on + strand, within MPMX19_04980at 453.528 kb on + strand, within MPMX19_04980at 453.529 kb on - strand, within MPMX19_04980at 453.529 kb on - strand, within MPMX19_04980

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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450,674 + MPMX19_04978 0.66 +0.1
450,674 + MPMX19_04978 0.66 +0.3
450,674 + MPMX19_04978 0.66 +0.9
450,674 + MPMX19_04978 0.66 +0.2
450,674 + MPMX19_04978 0.66 +0.7
450,674 + MPMX19_04978 0.66 -0.0
450,675 - MPMX19_04978 0.66 +0.5
450,675 - MPMX19_04978 0.66 +0.4
451,103 + MPMX19_04978 0.83 -1.0
451,103 + MPMX19_04978 0.83 +0.2
451,103 + MPMX19_04978 0.83 +0.1
451,103 + MPMX19_04978 0.83 -0.0
451,103 + MPMX19_04978 0.83 -0.5
451,104 - MPMX19_04978 0.83 -0.4
451,104 - MPMX19_04978 0.83 +0.0
451,104 - MPMX19_04978 0.83 +0.3
451,104 - MPMX19_04978 0.83 +1.1
451,104 - MPMX19_04978 0.83 -0.4
451,104 - MPMX19_04978 0.83 -0.3
451,196 + MPMX19_04978 0.86 +0.2
451,197 - MPMX19_04978 0.86 +1.0
451,376 + -0.1
451,377 - +0.3
451,657 + MPMX19_04979 0.10 +0.4
451,657 + MPMX19_04979 0.10 -1.6
451,657 + MPMX19_04979 0.10 -1.4
451,658 - MPMX19_04979 0.10 +1.4
451,658 - MPMX19_04979 0.10 +0.1
451,658 - MPMX19_04979 0.10 +0.0
451,762 + MPMX19_04979 0.20 +0.1
451,978 + MPMX19_04979 0.40 +0.7
451,979 - MPMX19_04979 0.40 +1.5
451,979 - MPMX19_04979 0.40 +0.1
451,979 - MPMX19_04979 0.40 -0.5
452,110 + MPMX19_04979 0.53 -1.8
452,111 - MPMX19_04979 0.53 +0.1
452,111 - MPMX19_04979 0.53 +0.9
452,111 - MPMX19_04979 0.53 -0.3
452,296 + MPMX19_04979 0.70 -0.8
452,296 + MPMX19_04979 0.70 +0.2
452,296 + MPMX19_04979 0.70 +0.2
452,296 + MPMX19_04979 0.70 -0.8
452,296 + MPMX19_04979 0.70 +0.3
452,297 - MPMX19_04979 0.70 +2.0
452,297 - MPMX19_04979 0.70 +0.9
452,297 - MPMX19_04979 0.70 +1.5
452,297 - MPMX19_04979 0.70 -1.0
452,297 - MPMX19_04979 0.70 -0.0
452,297 - MPMX19_04979 0.70 +0.3
452,302 + MPMX19_04979 0.71 -0.0
452,302 + MPMX19_04979 0.71 +0.8
452,303 - MPMX19_04979 0.71 -1.2
452,303 - MPMX19_04979 0.71 +0.2
452,303 - MPMX19_04979 0.71 -0.2
452,303 - MPMX19_04979 0.71 +0.2
452,326 + MPMX19_04979 0.73 +0.7
452,326 + MPMX19_04979 0.73 -0.5
452,326 + MPMX19_04979 0.73 -0.2
452,326 + MPMX19_04979 0.73 +0.3
452,327 - MPMX19_04979 0.73 +1.1
452,327 - MPMX19_04979 0.73 +0.9
452,327 - MPMX19_04979 0.73 +1.0
452,327 - MPMX19_04979 0.73 +0.3
452,327 - MPMX19_04979 0.73 -0.8
452,327 - MPMX19_04979 0.73 -0.6
452,327 - MPMX19_04979 0.73 -0.3
452,356 + MPMX19_04979 0.76 +0.5
452,356 + MPMX19_04979 0.76 +0.2
452,357 - MPMX19_04979 0.76 -0.9
452,357 - MPMX19_04979 0.76 -0.0
452,357 - MPMX19_04979 0.76 +0.8
452,359 + MPMX19_04979 0.76 +0.5
452,359 + MPMX19_04979 0.76 +1.1
452,359 + MPMX19_04979 0.76 -0.8
452,359 + MPMX19_04979 0.76 -0.6
452,359 + MPMX19_04979 0.76 +0.8
452,360 - MPMX19_04979 0.76 +0.8
452,360 - MPMX19_04979 0.76 -1.3
452,360 - MPMX19_04979 0.76 -0.3
452,360 - MPMX19_04979 0.76 -0.7
452,360 - MPMX19_04979 0.76 -0.0
452,360 - MPMX19_04979 0.76 +0.2
452,360 - MPMX19_04979 0.76 +0.7
452,360 - MPMX19_04979 0.76 -2.4
452,360 - MPMX19_04979 0.76 -1.9
452,360 - MPMX19_04979 0.76 -0.4
452,360 - MPMX19_04979 0.76 +0.6
452,360 - MPMX19_04979 0.76 +0.2
452,551 + +0.2
452,551 + +1.9
452,551 + -0.4
452,551 + -0.6
452,551 + -0.3
452,551 + -0.9
452,551 + -0.7
452,551 + -1.4
452,552 - +1.0
452,554 + -0.0
452,554 + -0.0
452,554 + +0.0
452,554 + -0.8
452,554 + -0.3
452,554 + -0.5
452,554 + -0.0
452,554 + -0.5
452,554 + +0.3
452,554 + +0.8
452,555 - +0.3
452,555 - -0.0
452,555 - -1.4
452,555 - +0.2
452,555 - +0.1
452,555 - -0.5
452,555 - -0.2
452,802 + MPMX19_04980 0.10 -0.5
452,802 + MPMX19_04980 0.10 -0.6
452,802 + MPMX19_04980 0.10 +0.2
452,803 - MPMX19_04980 0.10 -1.8
452,803 - MPMX19_04980 0.10 +0.5
452,803 - MPMX19_04980 0.10 +0.8
452,805 + MPMX19_04980 0.10 -0.9
452,805 + MPMX19_04980 0.10 +0.2
452,806 - MPMX19_04980 0.10 -0.1
452,806 - MPMX19_04980 0.10 +0.3
452,806 - MPMX19_04980 0.10 +0.8
452,806 - MPMX19_04980 0.10 -0.1
452,806 - MPMX19_04980 0.10 +0.4
452,806 - MPMX19_04980 0.10 -0.1
453,186 + MPMX19_04980 0.31 -0.9
453,186 + MPMX19_04980 0.31 +0.2
453,186 + MPMX19_04980 0.31 +0.6
453,187 - MPMX19_04980 0.31 +0.3
453,187 - MPMX19_04980 0.31 -0.1
453,187 - MPMX19_04980 0.31 -0.3
453,187 - MPMX19_04980 0.31 +0.5
453,187 - MPMX19_04980 0.31 +0.0
453,187 - MPMX19_04980 0.31 +0.3
453,187 - MPMX19_04980 0.31 +1.0
453,187 - MPMX19_04980 0.31 -0.6
453,187 - MPMX19_04980 0.31 -0.0
453,225 + MPMX19_04980 0.33 -0.3
453,225 + MPMX19_04980 0.33 +0.1
453,225 + MPMX19_04980 0.33 -1.2
453,225 + MPMX19_04980 0.33 +0.4
453,225 + MPMX19_04980 0.33 +0.7
453,225 + MPMX19_04980 0.33 -0.6
453,225 + MPMX19_04980 0.33 -0.9
453,225 + MPMX19_04980 0.33 +0.3
453,225 + MPMX19_04980 0.33 -1.2
453,225 + MPMX19_04980 0.33 +1.4
453,226 - MPMX19_04980 0.33 -0.2
453,226 - MPMX19_04980 0.33 -1.8
453,226 - MPMX19_04980 0.33 -0.5
453,226 - MPMX19_04980 0.33 +0.5
453,226 - MPMX19_04980 0.33 -0.0
453,226 - MPMX19_04980 0.33 -0.3
453,226 - MPMX19_04980 0.33 +0.5
453,226 - MPMX19_04980 0.33 -0.8
453,226 - MPMX19_04980 0.33 -0.5
453,226 - MPMX19_04980 0.33 +1.4
453,226 - MPMX19_04980 0.33 -0.6
453,226 - MPMX19_04980 0.33 +0.9
453,226 - MPMX19_04980 0.33 -0.4
453,226 - MPMX19_04980 0.33 +0.2
453,226 - MPMX19_04980 0.33 +0.7
453,226 - MPMX19_04980 0.33 +0.7
453,300 - MPMX19_04980 0.37 +1.3
453,300 - MPMX19_04980 0.37 -0.7
453,300 - MPMX19_04980 0.37 -0.6
453,300 - MPMX19_04980 0.37 -1.5
453,366 + MPMX19_04980 0.41 +0.8
453,366 + MPMX19_04980 0.41 +0.2
453,366 + MPMX19_04980 0.41 -0.1
453,367 - MPMX19_04980 0.41 -1.3
453,367 - MPMX19_04980 0.41 -0.5
453,367 - MPMX19_04980 0.41 +0.5
453,528 + MPMX19_04980 0.50 -1.9
453,528 + MPMX19_04980 0.50 +0.4
453,528 + MPMX19_04980 0.50 +1.1
453,528 + MPMX19_04980 0.50 -0.8
453,528 + MPMX19_04980 0.50 +0.2
453,529 - MPMX19_04980 0.50 +1.2
453,529 - MPMX19_04980 0.50 +0.1

Or see this region's nucleotide sequence