Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04558

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04557 and MPMX19_04558 are separated by 184 nucleotidesMPMX19_04558 and MPMX19_04559 are separated by 27 nucleotides MPMX19_04557: MPMX19_04557 - Na(+)/H(+) antiporter NhaA, at 936,420 to 937,625 _04557 MPMX19_04558: MPMX19_04558 - hypothetical protein, at 937,810 to 940,437 _04558 MPMX19_04559: MPMX19_04559 - hypothetical protein, at 940,465 to 942,192 _04559 Position (kb) 937 938 939 940 941Strain fitness (log2 ratio) -2 -1 0 1 2at 936.951 kb on + strand, within MPMX19_04557at 936.951 kb on + strand, within MPMX19_04557at 936.952 kb on - strand, within MPMX19_04557at 936.952 kb on - strand, within MPMX19_04557at 936.952 kb on - strand, within MPMX19_04557at 936.952 kb on - strand, within MPMX19_04557at 937.050 kb on + strand, within MPMX19_04557at 937.051 kb on - strand, within MPMX19_04557at 937.051 kb on - strand, within MPMX19_04557at 937.051 kb on - strand, within MPMX19_04557at 937.051 kb on - strand, within MPMX19_04557at 937.585 kb on - strandat 937.623 kb on + strandat 937.624 kb on - strandat 937.877 kb on + strandat 937.877 kb on + strandat 937.877 kb on + strandat 937.877 kb on + strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.878 kb on - strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.889 kb on + strandat 937.890 kb on - strandat 937.890 kb on - strandat 937.890 kb on - strandat 937.890 kb on - strandat 937.890 kb on - strandat 938.058 kb on + strandat 938.096 kb on + strand, within MPMX19_04558at 938.096 kb on + strand, within MPMX19_04558at 938.096 kb on + strand, within MPMX19_04558at 938.096 kb on + strand, within MPMX19_04558at 938.097 kb on - strand, within MPMX19_04558at 938.261 kb on + strand, within MPMX19_04558at 938.261 kb on + strand, within MPMX19_04558at 938.261 kb on + strand, within MPMX19_04558at 938.261 kb on + strand, within MPMX19_04558at 938.261 kb on + strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.262 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.520 kb on - strand, within MPMX19_04558at 938.651 kb on + strand, within MPMX19_04558at 938.651 kb on + strand, within MPMX19_04558at 938.651 kb on + strand, within MPMX19_04558at 938.652 kb on - strand, within MPMX19_04558at 938.652 kb on - strand, within MPMX19_04558at 938.652 kb on - strand, within MPMX19_04558at 938.652 kb on - strand, within MPMX19_04558at 938.652 kb on - strand, within MPMX19_04558at 938.652 kb on - strand, within MPMX19_04558at 939.050 kb on + strand, within MPMX19_04558at 939.051 kb on - strand, within MPMX19_04558at 939.051 kb on - strand, within MPMX19_04558at 939.051 kb on - strand, within MPMX19_04558at 939.051 kb on - strand, within MPMX19_04558at 939.051 kb on - strand, within MPMX19_04558at 939.051 kb on - strand, within MPMX19_04558at 939.051 kb on - strand, within MPMX19_04558at 939.051 kb on - strand, within MPMX19_04558at 939.431 kb on + strand, within MPMX19_04558at 939.431 kb on + strand, within MPMX19_04558at 939.431 kb on + strand, within MPMX19_04558at 939.431 kb on + strand, within MPMX19_04558at 939.432 kb on - strand, within MPMX19_04558at 939.432 kb on - strand, within MPMX19_04558at 939.432 kb on - strand, within MPMX19_04558at 939.432 kb on - strand, within MPMX19_04558at 939.432 kb on - strand, within MPMX19_04558at 939.432 kb on - strand, within MPMX19_04558at 939.432 kb on - strand, within MPMX19_04558at 939.432 kb on - strand, within MPMX19_04558at 939.432 kb on - strand, within MPMX19_04558at 939.498 kb on - strand, within MPMX19_04558at 940.037 kb on + strand, within MPMX19_04558at 940.037 kb on + strand, within MPMX19_04558at 940.038 kb on - strand, within MPMX19_04558at 940.218 kb on - strandat 940.218 kb on - strandat 940.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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936,951 + MPMX19_04557 0.44 +1.2
936,951 + MPMX19_04557 0.44 +0.6
936,952 - MPMX19_04557 0.44 +1.1
936,952 - MPMX19_04557 0.44 +1.0
936,952 - MPMX19_04557 0.44 +0.8
936,952 - MPMX19_04557 0.44 +0.3
937,050 + MPMX19_04557 0.52 +0.1
937,051 - MPMX19_04557 0.52 +1.3
937,051 - MPMX19_04557 0.52 +0.1
937,051 - MPMX19_04557 0.52 +0.0
937,051 - MPMX19_04557 0.52 -0.3
937,585 - +0.0
937,623 + -0.7
937,624 - +0.1
937,877 + -1.1
937,877 + +0.3
937,877 + -0.8
937,877 + +0.6
937,878 - +0.0
937,878 - -0.7
937,878 - +0.8
937,878 - -0.9
937,878 - +0.5
937,878 - +0.4
937,878 - +0.7
937,889 + -0.2
937,889 + -0.0
937,889 + -1.6
937,889 + +0.8
937,889 + -0.0
937,889 + -1.4
937,889 + -0.9
937,889 + +1.7
937,890 - +0.4
937,890 - +0.8
937,890 - -0.9
937,890 - +1.2
937,890 - +2.1
938,058 + -0.5
938,096 + MPMX19_04558 0.11 +0.6
938,096 + MPMX19_04558 0.11 -1.1
938,096 + MPMX19_04558 0.11 -1.4
938,096 + MPMX19_04558 0.11 -0.2
938,097 - MPMX19_04558 0.11 -1.8
938,261 + MPMX19_04558 0.17 +0.6
938,261 + MPMX19_04558 0.17 +0.0
938,261 + MPMX19_04558 0.17 -1.8
938,261 + MPMX19_04558 0.17 -1.2
938,261 + MPMX19_04558 0.17 +0.1
938,262 - MPMX19_04558 0.17 +1.0
938,262 - MPMX19_04558 0.17 -0.1
938,262 - MPMX19_04558 0.17 +0.2
938,262 - MPMX19_04558 0.17 +0.8
938,262 - MPMX19_04558 0.17 +0.1
938,262 - MPMX19_04558 0.17 -0.2
938,262 - MPMX19_04558 0.17 +1.0
938,520 - MPMX19_04558 0.27 -1.0
938,520 - MPMX19_04558 0.27 -0.2
938,520 - MPMX19_04558 0.27 -1.0
938,520 - MPMX19_04558 0.27 +1.6
938,520 - MPMX19_04558 0.27 +0.2
938,520 - MPMX19_04558 0.27 -0.2
938,520 - MPMX19_04558 0.27 +1.1
938,651 + MPMX19_04558 0.32 +0.1
938,651 + MPMX19_04558 0.32 +0.6
938,651 + MPMX19_04558 0.32 -0.3
938,652 - MPMX19_04558 0.32 -0.9
938,652 - MPMX19_04558 0.32 +0.6
938,652 - MPMX19_04558 0.32 +0.3
938,652 - MPMX19_04558 0.32 +0.9
938,652 - MPMX19_04558 0.32 +0.4
938,652 - MPMX19_04558 0.32 +0.1
939,050 + MPMX19_04558 0.47 +1.3
939,051 - MPMX19_04558 0.47 +0.0
939,051 - MPMX19_04558 0.47 -0.4
939,051 - MPMX19_04558 0.47 +0.2
939,051 - MPMX19_04558 0.47 +0.4
939,051 - MPMX19_04558 0.47 +1.4
939,051 - MPMX19_04558 0.47 +0.5
939,051 - MPMX19_04558 0.47 -0.2
939,051 - MPMX19_04558 0.47 -0.5
939,431 + MPMX19_04558 0.62 +0.2
939,431 + MPMX19_04558 0.62 +1.4
939,431 + MPMX19_04558 0.62 -0.0
939,431 + MPMX19_04558 0.62 -1.2
939,432 - MPMX19_04558 0.62 +1.6
939,432 - MPMX19_04558 0.62 +0.6
939,432 - MPMX19_04558 0.62 +0.3
939,432 - MPMX19_04558 0.62 -0.3
939,432 - MPMX19_04558 0.62 -1.1
939,432 - MPMX19_04558 0.62 +0.2
939,432 - MPMX19_04558 0.62 -0.0
939,432 - MPMX19_04558 0.62 -0.7
939,432 - MPMX19_04558 0.62 -1.4
939,498 - MPMX19_04558 0.64 +1.1
940,037 + MPMX19_04558 0.85 -0.2
940,037 + MPMX19_04558 0.85 -0.4
940,038 - MPMX19_04558 0.85 +0.8
940,218 - -0.4
940,218 - +1.6
940,218 - +0.9

Or see this region's nucleotide sequence