Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04001

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04000 and MPMX19_04001 are separated by 169 nucleotidesMPMX19_04001 and MPMX19_04002 are separated by 120 nucleotides MPMX19_04000: MPMX19_04000 - Flagellar motor switch protein FliG, at 295,255 to 296,277 _04000 MPMX19_04001: MPMX19_04001 - hypothetical protein, at 296,447 to 297,145 _04001 MPMX19_04002: MPMX19_04002 - HTH-type transcriptional regulator MurR, at 297,266 to 298,159 _04002 Position (kb) 296 297 298Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 295.884 kb on - strand, within MPMX19_04000at 295.898 kb on + strand, within MPMX19_04000at 295.898 kb on + strand, within MPMX19_04000at 295.898 kb on + strand, within MPMX19_04000at 295.899 kb on - strand, within MPMX19_04000at 295.899 kb on - strand, within MPMX19_04000at 295.899 kb on - strand, within MPMX19_04000at 295.899 kb on - strand, within MPMX19_04000at 295.899 kb on - strand, within MPMX19_04000at 295.899 kb on - strand, within MPMX19_04000at 295.899 kb on - strand, within MPMX19_04000at 295.899 kb on - strand, within MPMX19_04000at 296.252 kb on + strandat 296.252 kb on + strandat 296.253 kb on - strandat 296.253 kb on - strandat 296.281 kb on + strandat 296.281 kb on + strandat 296.281 kb on + strandat 296.282 kb on - strandat 296.282 kb on - strandat 296.282 kb on - strandat 296.282 kb on - strandat 296.336 kb on - strandat 296.364 kb on + strandat 296.561 kb on + strand, within MPMX19_04001at 296.562 kb on - strand, within MPMX19_04001at 296.562 kb on - strand, within MPMX19_04001at 296.657 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.807 kb on + strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.808 kb on - strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.876 kb on + strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.877 kb on - strand, within MPMX19_04001at 296.945 kb on + strand, within MPMX19_04001at 297.159 kb on + strandat 297.159 kb on + strandat 297.160 kb on - strandat 297.170 kb on + strandat 297.170 kb on + strandat 297.170 kb on + strandat 297.171 kb on - strandat 297.171 kb on - strandat 297.171 kb on - strandat 297.178 kb on + strandat 297.178 kb on + strandat 297.179 kb on - strandat 297.179 kb on - strandat 297.202 kb on + strandat 297.215 kb on + strandat 297.215 kb on + strandat 297.229 kb on + strandat 297.229 kb on + strandat 297.305 kb on - strandat 297.368 kb on + strand, within MPMX19_04002at 297.368 kb on + strand, within MPMX19_04002at 297.368 kb on + strand, within MPMX19_04002at 297.368 kb on + strand, within MPMX19_04002at 297.369 kb on - strand, within MPMX19_04002at 297.447 kb on - strand, within MPMX19_04002at 297.464 kb on + strand, within MPMX19_04002at 297.464 kb on + strand, within MPMX19_04002at 297.464 kb on + strand, within MPMX19_04002at 297.464 kb on + strand, within MPMX19_04002at 297.465 kb on - strand, within MPMX19_04002at 297.716 kb on + strand, within MPMX19_04002at 297.716 kb on + strand, within MPMX19_04002at 297.716 kb on + strand, within MPMX19_04002at 297.716 kb on + strand, within MPMX19_04002at 297.716 kb on + strand, within MPMX19_04002at 297.717 kb on - strand, within MPMX19_04002at 297.751 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 298.118 kb on + strandat 298.118 kb on + strandat 298.118 kb on + strandat 298.118 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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295,884 - MPMX19_04000 0.61 +0.2
295,898 + MPMX19_04000 0.63 -0.5
295,898 + MPMX19_04000 0.63 -0.6
295,898 + MPMX19_04000 0.63 +0.0
295,899 - MPMX19_04000 0.63 -1.0
295,899 - MPMX19_04000 0.63 -2.1
295,899 - MPMX19_04000 0.63 -1.5
295,899 - MPMX19_04000 0.63 -0.1
295,899 - MPMX19_04000 0.63 -1.0
295,899 - MPMX19_04000 0.63 -0.2
295,899 - MPMX19_04000 0.63 -2.0
295,899 - MPMX19_04000 0.63 -0.0
296,252 + +1.3
296,252 + -0.8
296,253 - -0.8
296,253 - +0.2
296,281 + -1.6
296,281 + -0.2
296,281 + -0.9
296,282 - -0.0
296,282 - +1.0
296,282 - -1.3
296,282 - -2.0
296,336 - +0.4
296,364 + +1.2
296,561 + MPMX19_04001 0.16 +0.8
296,562 - MPMX19_04001 0.16 -0.7
296,562 - MPMX19_04001 0.16 -0.7
296,657 + MPMX19_04001 0.30 +0.3
296,807 + MPMX19_04001 0.52 -0.7
296,807 + MPMX19_04001 0.52 -0.5
296,807 + MPMX19_04001 0.52 +0.4
296,807 + MPMX19_04001 0.52 -0.4
296,807 + MPMX19_04001 0.52 +0.4
296,807 + MPMX19_04001 0.52 -0.0
296,807 + MPMX19_04001 0.52 -0.4
296,807 + MPMX19_04001 0.52 -0.2
296,807 + MPMX19_04001 0.52 -1.5
296,807 + MPMX19_04001 0.52 +0.8
296,807 + MPMX19_04001 0.52 +0.0
296,807 + MPMX19_04001 0.52 +0.5
296,807 + MPMX19_04001 0.52 -1.6
296,807 + MPMX19_04001 0.52 -0.4
296,807 + MPMX19_04001 0.52 +1.1
296,807 + MPMX19_04001 0.52 -0.4
296,807 + MPMX19_04001 0.52 -0.9
296,807 + MPMX19_04001 0.52 -1.4
296,807 + MPMX19_04001 0.52 -1.8
296,807 + MPMX19_04001 0.52 -1.9
296,807 + MPMX19_04001 0.52 -0.5
296,807 + MPMX19_04001 0.52 +0.1
296,807 + MPMX19_04001 0.52 +0.2
296,807 + MPMX19_04001 0.52 -0.0
296,807 + MPMX19_04001 0.52 -1.6
296,807 + MPMX19_04001 0.52 -0.8
296,807 + MPMX19_04001 0.52 -2.1
296,807 + MPMX19_04001 0.52 -0.5
296,807 + MPMX19_04001 0.52 +1.0
296,807 + MPMX19_04001 0.52 +0.1
296,807 + MPMX19_04001 0.52 +1.0
296,807 + MPMX19_04001 0.52 +1.4
296,807 + MPMX19_04001 0.52 +1.0
296,807 + MPMX19_04001 0.52 -0.9
296,808 - MPMX19_04001 0.52 -0.8
296,808 - MPMX19_04001 0.52 -1.0
296,808 - MPMX19_04001 0.52 -0.8
296,808 - MPMX19_04001 0.52 +1.2
296,808 - MPMX19_04001 0.52 +1.6
296,808 - MPMX19_04001 0.52 -0.6
296,808 - MPMX19_04001 0.52 -0.9
296,808 - MPMX19_04001 0.52 -0.2
296,808 - MPMX19_04001 0.52 +1.0
296,808 - MPMX19_04001 0.52 -1.7
296,808 - MPMX19_04001 0.52 +1.6
296,808 - MPMX19_04001 0.52 -0.9
296,808 - MPMX19_04001 0.52 -0.5
296,808 - MPMX19_04001 0.52 -1.1
296,808 - MPMX19_04001 0.52 -0.9
296,808 - MPMX19_04001 0.52 -0.7
296,808 - MPMX19_04001 0.52 -0.6
296,808 - MPMX19_04001 0.52 -0.0
296,808 - MPMX19_04001 0.52 -1.4
296,808 - MPMX19_04001 0.52 -0.8
296,808 - MPMX19_04001 0.52 +0.1
296,808 - MPMX19_04001 0.52 +0.2
296,808 - MPMX19_04001 0.52 -0.1
296,808 - MPMX19_04001 0.52 +0.4
296,808 - MPMX19_04001 0.52 +0.6
296,808 - MPMX19_04001 0.52 -0.0
296,808 - MPMX19_04001 0.52 +0.0
296,808 - MPMX19_04001 0.52 +0.1
296,808 - MPMX19_04001 0.52 +0.2
296,808 - MPMX19_04001 0.52 -0.9
296,808 - MPMX19_04001 0.52 -0.5
296,808 - MPMX19_04001 0.52 -0.3
296,808 - MPMX19_04001 0.52 -0.2
296,808 - MPMX19_04001 0.52 +2.9
296,808 - MPMX19_04001 0.52 -0.8
296,808 - MPMX19_04001 0.52 -0.9
296,808 - MPMX19_04001 0.52 +0.8
296,808 - MPMX19_04001 0.52 +0.2
296,808 - MPMX19_04001 0.52 +0.6
296,808 - MPMX19_04001 0.52 -1.2
296,808 - MPMX19_04001 0.52 -0.9
296,808 - MPMX19_04001 0.52 -1.2
296,808 - MPMX19_04001 0.52 +0.2
296,808 - MPMX19_04001 0.52 +1.4
296,808 - MPMX19_04001 0.52 +0.2
296,808 - MPMX19_04001 0.52 +1.6
296,808 - MPMX19_04001 0.52 +0.3
296,808 - MPMX19_04001 0.52 -0.8
296,876 + MPMX19_04001 0.61 +1.2
296,876 + MPMX19_04001 0.61 +1.1
296,876 + MPMX19_04001 0.61 +0.5
296,876 + MPMX19_04001 0.61 -1.4
296,876 + MPMX19_04001 0.61 -0.6
296,876 + MPMX19_04001 0.61 -1.9
296,876 + MPMX19_04001 0.61 -1.9
296,876 + MPMX19_04001 0.61 +1.3
296,876 + MPMX19_04001 0.61 -2.0
296,876 + MPMX19_04001 0.61 -2.1
296,876 + MPMX19_04001 0.61 +0.4
296,876 + MPMX19_04001 0.61 +0.1
296,876 + MPMX19_04001 0.61 -0.9
296,876 + MPMX19_04001 0.61 -0.5
296,876 + MPMX19_04001 0.61 -2.0
296,876 + MPMX19_04001 0.61 -0.0
296,876 + MPMX19_04001 0.61 -0.0
296,877 - MPMX19_04001 0.62 -0.4
296,877 - MPMX19_04001 0.62 -1.0
296,877 - MPMX19_04001 0.62 -1.0
296,877 - MPMX19_04001 0.62 +0.1
296,877 - MPMX19_04001 0.62 +0.4
296,877 - MPMX19_04001 0.62 +1.6
296,877 - MPMX19_04001 0.62 -0.1
296,877 - MPMX19_04001 0.62 +0.1
296,877 - MPMX19_04001 0.62 +0.8
296,877 - MPMX19_04001 0.62 -0.4
296,877 - MPMX19_04001 0.62 -0.3
296,877 - MPMX19_04001 0.62 +0.1
296,877 - MPMX19_04001 0.62 +0.9
296,877 - MPMX19_04001 0.62 -1.8
296,877 - MPMX19_04001 0.62 -0.1
296,877 - MPMX19_04001 0.62 -0.4
296,877 - MPMX19_04001 0.62 -1.0
296,877 - MPMX19_04001 0.62 -0.0
296,945 + MPMX19_04001 0.71 +0.4
297,159 + -0.3
297,159 + -1.3
297,160 - -0.2
297,170 + +0.2
297,170 + +0.2
297,170 + -0.8
297,171 - +0.4
297,171 - -1.6
297,171 - +1.1
297,178 + -1.5
297,178 + -0.8
297,179 - +0.6
297,179 - +0.3
297,202 + +0.1
297,215 + +0.2
297,215 + +0.5
297,229 + +0.4
297,229 + -0.0
297,305 - -3.0
297,368 + MPMX19_04002 0.11 -0.1
297,368 + MPMX19_04002 0.11 +0.2
297,368 + MPMX19_04002 0.11 -0.2
297,368 + MPMX19_04002 0.11 -0.4
297,369 - MPMX19_04002 0.12 -1.3
297,447 - MPMX19_04002 0.20 -0.7
297,464 + MPMX19_04002 0.22 +0.7
297,464 + MPMX19_04002 0.22 -1.1
297,464 + MPMX19_04002 0.22 +0.6
297,464 + MPMX19_04002 0.22 +1.8
297,465 - MPMX19_04002 0.22 +0.2
297,716 + MPMX19_04002 0.50 -0.4
297,716 + MPMX19_04002 0.50 +0.3
297,716 + MPMX19_04002 0.50 -0.2
297,716 + MPMX19_04002 0.50 +0.1
297,716 + MPMX19_04002 0.50 -0.4
297,717 - MPMX19_04002 0.50 +0.4
297,751 + MPMX19_04002 0.54 -0.2
297,752 + MPMX19_04002 0.54 -0.4
297,752 + MPMX19_04002 0.54 -0.0
297,752 + MPMX19_04002 0.54 +0.5
297,752 + MPMX19_04002 0.54 +0.2
297,752 + MPMX19_04002 0.54 +1.6
297,752 + MPMX19_04002 0.54 +0.2
297,752 + MPMX19_04002 0.54 -0.8
297,752 + MPMX19_04002 0.54 -2.3
297,753 - MPMX19_04002 0.54 -1.6
297,753 - MPMX19_04002 0.54 -0.0
297,753 - MPMX19_04002 0.54 -0.2
297,753 - MPMX19_04002 0.54 -1.0
297,753 - MPMX19_04002 0.54 +0.6
297,753 - MPMX19_04002 0.54 +0.2
297,753 - MPMX19_04002 0.54 -0.6
298,118 + -0.0
298,118 + -1.0
298,118 + -0.5
298,118 + +0.8

Or see this region's nucleotide sequence