Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03804

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03801 and MPMX19_03802 are separated by 10 nucleotidesMPMX19_03802 and MPMX19_03803 overlap by 4 nucleotidesMPMX19_03803 and MPMX19_03804 overlap by 4 nucleotidesMPMX19_03804 and MPMX19_03805 overlap by 1 nucleotidesMPMX19_03805 and MPMX19_03806 are separated by 3 nucleotidesMPMX19_03806 and MPMX19_03807 are separated by 5 nucleotides MPMX19_03801: MPMX19_03801 - hypothetical protein, at 36,312 to 37,238 _03801 MPMX19_03802: MPMX19_03802 - hypothetical protein, at 37,249 to 37,623 _03802 MPMX19_03803: MPMX19_03803 - hypothetical protein, at 37,620 to 38,057 _03803 MPMX19_03804: MPMX19_03804 - hypothetical protein, at 38,054 to 38,587 _03804 MPMX19_03805: MPMX19_03805 - hypothetical protein, at 38,587 to 38,997 _03805 MPMX19_03806: MPMX19_03806 - hypothetical protein, at 39,001 to 39,180 _03806 MPMX19_03807: MPMX19_03807 - hypothetical protein, at 39,186 to 40,433 _03807 Position (kb) 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1at 37.086 kb on + strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.086 kb on + strand, within MPMX19_03801at 37.087 kb on - strand, within MPMX19_03801at 37.092 kb on + strand, within MPMX19_03801at 37.092 kb on + strand, within MPMX19_03801at 37.092 kb on + strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.093 kb on - strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.098 kb on + strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.099 kb on - strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.134 kb on + strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.135 kb on - strand, within MPMX19_03801at 37.137 kb on + strand, within MPMX19_03801at 37.137 kb on + strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.138 kb on - strand, within MPMX19_03801at 37.164 kb on + strandat 37.236 kb on + strandat 37.236 kb on + strandat 37.236 kb on + strandat 37.236 kb on + strandat 37.236 kb on + strandat 37.236 kb on + strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.237 kb on - strandat 37.626 kb on + strandat 37.626 kb on + strandat 37.626 kb on + strandat 37.626 kb on + strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.627 kb on - strandat 37.771 kb on - strand, within MPMX19_03803at 37.771 kb on - strand, within MPMX19_03803at 37.857 kb on + strand, within MPMX19_03803at 37.857 kb on + strand, within MPMX19_03803at 37.858 kb on - strand, within MPMX19_03803at 37.858 kb on - strand, within MPMX19_03803at 37.858 kb on - strand, within MPMX19_03803at 37.900 kb on - strand, within MPMX19_03803at 37.900 kb on - strand, within MPMX19_03803at 38.163 kb on + strand, within MPMX19_03804at 38.163 kb on + strand, within MPMX19_03804at 38.163 kb on + strand, within MPMX19_03804at 38.163 kb on + strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.164 kb on - strand, within MPMX19_03804at 38.266 kb on + strand, within MPMX19_03804at 38.266 kb on + strand, within MPMX19_03804at 38.327 kb on + strand, within MPMX19_03804at 38.327 kb on + strand, within MPMX19_03804at 38.328 kb on - strand, within MPMX19_03804at 38.328 kb on - strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.429 kb on + strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.430 kb on - strand, within MPMX19_03804at 38.912 kb on - strand, within MPMX19_03805at 38.912 kb on - strand, within MPMX19_03805at 39.147 kb on + strand, within MPMX19_03806at 39.147 kb on + strand, within MPMX19_03806at 39.147 kb on + strand, within MPMX19_03806at 39.147 kb on + strand, within MPMX19_03806at 39.148 kb on - strand, within MPMX19_03806at 39.148 kb on - strand, within MPMX19_03806at 39.148 kb on - strand, within MPMX19_03806at 39.148 kb on - strand, within MPMX19_03806at 39.243 kb on + strandat 39.243 kb on + strandat 39.243 kb on + strandat 39.243 kb on + strandat 39.243 kb on + strandat 39.243 kb on + strandat 39.243 kb on + strandat 39.244 kb on - strandat 39.244 kb on - strandat 39.244 kb on - strandat 39.244 kb on - strandat 39.244 kb on - strandat 39.244 kb on - strandat 39.336 kb on + strand, within MPMX19_03807at 39.336 kb on + strand, within MPMX19_03807at 39.336 kb on + strand, within MPMX19_03807at 39.336 kb on + strand, within MPMX19_03807at 39.337 kb on - strand, within MPMX19_03807at 39.337 kb on - strand, within MPMX19_03807at 39.553 kb on + strand, within MPMX19_03807at 39.553 kb on + strand, within MPMX19_03807at 39.554 kb on - strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.576 kb on + strand, within MPMX19_03807at 39.577 kb on - strand, within MPMX19_03807at 39.577 kb on - strand, within MPMX19_03807

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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37,086 + MPMX19_03801 0.83 +0.4
37,086 + MPMX19_03801 0.83 +0.6
37,086 + MPMX19_03801 0.83 +0.6
37,086 + MPMX19_03801 0.83 +0.7
37,086 + MPMX19_03801 0.83 -0.1
37,086 + MPMX19_03801 0.83 -0.8
37,087 - MPMX19_03801 0.84 -0.6
37,092 + MPMX19_03801 0.84 -2.0
37,092 + MPMX19_03801 0.84 -0.0
37,092 + MPMX19_03801 0.84 -0.0
37,093 - MPMX19_03801 0.84 -1.0
37,093 - MPMX19_03801 0.84 +0.2
37,093 - MPMX19_03801 0.84 +0.3
37,093 - MPMX19_03801 0.84 +0.3
37,093 - MPMX19_03801 0.84 -0.4
37,093 - MPMX19_03801 0.84 +0.2
37,098 + MPMX19_03801 0.85 -1.3
37,098 + MPMX19_03801 0.85 +0.7
37,098 + MPMX19_03801 0.85 -0.8
37,098 + MPMX19_03801 0.85 -1.0
37,098 + MPMX19_03801 0.85 +0.1
37,098 + MPMX19_03801 0.85 +0.6
37,098 + MPMX19_03801 0.85 -0.6
37,098 + MPMX19_03801 0.85 +1.0
37,098 + MPMX19_03801 0.85 -1.2
37,098 + MPMX19_03801 0.85 +0.6
37,098 + MPMX19_03801 0.85 -0.6
37,098 + MPMX19_03801 0.85 +0.1
37,099 - MPMX19_03801 0.85 +0.0
37,099 - MPMX19_03801 0.85 +0.7
37,099 - MPMX19_03801 0.85 +0.3
37,099 - MPMX19_03801 0.85 +0.1
37,099 - MPMX19_03801 0.85 -0.3
37,099 - MPMX19_03801 0.85 +0.3
37,099 - MPMX19_03801 0.85 -0.0
37,099 - MPMX19_03801 0.85 -0.6
37,134 + MPMX19_03801 0.89 -0.3
37,134 + MPMX19_03801 0.89 -0.8
37,134 + MPMX19_03801 0.89 -0.8
37,134 + MPMX19_03801 0.89 -0.3
37,134 + MPMX19_03801 0.89 -1.1
37,134 + MPMX19_03801 0.89 -0.3
37,134 + MPMX19_03801 0.89 -1.0
37,135 - MPMX19_03801 0.89 +0.8
37,135 - MPMX19_03801 0.89 -0.4
37,135 - MPMX19_03801 0.89 -0.3
37,135 - MPMX19_03801 0.89 +0.4
37,135 - MPMX19_03801 0.89 +1.2
37,135 - MPMX19_03801 0.89 -0.2
37,135 - MPMX19_03801 0.89 -0.0
37,135 - MPMX19_03801 0.89 -2.0
37,137 + MPMX19_03801 0.89 -0.1
37,137 + MPMX19_03801 0.89 -1.5
37,138 - MPMX19_03801 0.89 -0.4
37,138 - MPMX19_03801 0.89 -0.3
37,138 - MPMX19_03801 0.89 -0.4
37,138 - MPMX19_03801 0.89 +0.2
37,138 - MPMX19_03801 0.89 +0.4
37,138 - MPMX19_03801 0.89 -0.3
37,138 - MPMX19_03801 0.89 +0.8
37,138 - MPMX19_03801 0.89 +0.3
37,138 - MPMX19_03801 0.89 -0.9
37,164 + -0.4
37,236 + -0.5
37,236 + -0.1
37,236 + +0.5
37,236 + -0.6
37,236 + +0.8
37,236 + +0.2
37,237 - -0.4
37,237 - -1.4
37,237 - -0.2
37,237 - +0.5
37,237 - -0.3
37,237 - +0.4
37,237 - -0.4
37,626 + -2.8
37,626 + -1.2
37,626 + -0.4
37,626 + -0.3
37,627 - -0.3
37,627 - +0.3
37,627 - -0.3
37,627 - -0.2
37,627 - +0.4
37,627 - +0.0
37,627 - +0.4
37,627 - -1.4
37,627 - +0.5
37,627 - -0.6
37,771 - MPMX19_03803 0.34 +0.2
37,771 - MPMX19_03803 0.34 -0.3
37,857 + MPMX19_03803 0.54 -0.9
37,857 + MPMX19_03803 0.54 +0.1
37,858 - MPMX19_03803 0.54 -1.3
37,858 - MPMX19_03803 0.54 +0.3
37,858 - MPMX19_03803 0.54 -1.5
37,900 - MPMX19_03803 0.64 -1.1
37,900 - MPMX19_03803 0.64 +0.2
38,163 + MPMX19_03804 0.20 +0.6
38,163 + MPMX19_03804 0.20 +0.9
38,163 + MPMX19_03804 0.20 -1.0
38,163 + MPMX19_03804 0.20 +0.4
38,164 - MPMX19_03804 0.21 +0.4
38,164 - MPMX19_03804 0.21 +1.2
38,164 - MPMX19_03804 0.21 +0.7
38,164 - MPMX19_03804 0.21 +0.7
38,164 - MPMX19_03804 0.21 -0.0
38,164 - MPMX19_03804 0.21 -0.8
38,164 - MPMX19_03804 0.21 +0.1
38,164 - MPMX19_03804 0.21 +0.3
38,164 - MPMX19_03804 0.21 +1.4
38,164 - MPMX19_03804 0.21 -0.0
38,164 - MPMX19_03804 0.21 -0.8
38,266 + MPMX19_03804 0.40 -1.2
38,266 + MPMX19_03804 0.40 +0.2
38,327 + MPMX19_03804 0.51 -1.6
38,327 + MPMX19_03804 0.51 -0.7
38,328 - MPMX19_03804 0.51 -0.4
38,328 - MPMX19_03804 0.51 +1.6
38,429 + MPMX19_03804 0.70 -0.4
38,429 + MPMX19_03804 0.70 -0.0
38,429 + MPMX19_03804 0.70 -0.0
38,429 + MPMX19_03804 0.70 +0.2
38,429 + MPMX19_03804 0.70 +0.3
38,429 + MPMX19_03804 0.70 +0.6
38,429 + MPMX19_03804 0.70 -1.1
38,429 + MPMX19_03804 0.70 -0.2
38,429 + MPMX19_03804 0.70 +0.6
38,429 + MPMX19_03804 0.70 +1.6
38,429 + MPMX19_03804 0.70 -0.2
38,429 + MPMX19_03804 0.70 -1.6
38,429 + MPMX19_03804 0.70 +1.0
38,429 + MPMX19_03804 0.70 -0.0
38,429 + MPMX19_03804 0.70 +0.2
38,430 - MPMX19_03804 0.70 +0.0
38,430 - MPMX19_03804 0.70 +1.0
38,430 - MPMX19_03804 0.70 +0.4
38,430 - MPMX19_03804 0.70 -1.2
38,430 - MPMX19_03804 0.70 +0.3
38,430 - MPMX19_03804 0.70 -1.2
38,430 - MPMX19_03804 0.70 -0.2
38,430 - MPMX19_03804 0.70 -0.1
38,430 - MPMX19_03804 0.70 -0.0
38,430 - MPMX19_03804 0.70 +0.9
38,430 - MPMX19_03804 0.70 -0.0
38,430 - MPMX19_03804 0.70 +0.1
38,430 - MPMX19_03804 0.70 -0.4
38,430 - MPMX19_03804 0.70 -1.0
38,430 - MPMX19_03804 0.70 -0.0
38,430 - MPMX19_03804 0.70 -1.6
38,912 - MPMX19_03805 0.79 -0.2
38,912 - MPMX19_03805 0.79 +0.6
39,147 + MPMX19_03806 0.81 -0.9
39,147 + MPMX19_03806 0.81 +1.0
39,147 + MPMX19_03806 0.81 -0.9
39,147 + MPMX19_03806 0.81 -0.1
39,148 - MPMX19_03806 0.82 -0.6
39,148 - MPMX19_03806 0.82 -0.9
39,148 - MPMX19_03806 0.82 -0.6
39,148 - MPMX19_03806 0.82 -0.1
39,243 + -0.0
39,243 + +1.4
39,243 + +0.8
39,243 + -0.0
39,243 + -0.7
39,243 + +0.6
39,243 + -0.2
39,244 - -0.6
39,244 - +1.0
39,244 - -0.0
39,244 - +0.8
39,244 - -0.2
39,244 - +0.2
39,336 + MPMX19_03807 0.12 -0.4
39,336 + MPMX19_03807 0.12 -0.4
39,336 + MPMX19_03807 0.12 +1.1
39,336 + MPMX19_03807 0.12 -0.9
39,337 - MPMX19_03807 0.12 -0.4
39,337 - MPMX19_03807 0.12 +0.1
39,553 + MPMX19_03807 0.29 -0.4
39,553 + MPMX19_03807 0.29 +0.1
39,554 - MPMX19_03807 0.29 -0.2
39,558 + MPMX19_03807 0.30 +0.7
39,558 + MPMX19_03807 0.30 +0.3
39,558 + MPMX19_03807 0.30 +0.7
39,558 + MPMX19_03807 0.30 +0.3
39,558 + MPMX19_03807 0.30 +0.7
39,558 + MPMX19_03807 0.30 +1.0
39,558 + MPMX19_03807 0.30 +0.4
39,559 - MPMX19_03807 0.30 -0.4
39,559 - MPMX19_03807 0.30 +0.9
39,559 - MPMX19_03807 0.30 -0.3
39,559 - MPMX19_03807 0.30 +1.6
39,559 - MPMX19_03807 0.30 -0.9
39,559 - MPMX19_03807 0.30 +0.9
39,559 - MPMX19_03807 0.30 +0.0
39,559 - MPMX19_03807 0.30 -0.6
39,559 - MPMX19_03807 0.30 -0.9
39,559 - MPMX19_03807 0.30 +0.2
39,576 + MPMX19_03807 0.31 +0.2
39,577 - MPMX19_03807 0.31 -0.4
39,577 - MPMX19_03807 0.31 +0.8

Or see this region's nucleotide sequence